Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GTP13_RS06680 Genome accession   NZ_CP047378
Coordinates   1380256..1380861 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CAU16175     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1375256..1385861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTP13_RS06650 rsmS 1375961..1376122 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  GTP13_RS06655 priC 1376136..1376663 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  GTP13_RS06660 ybaN 1376733..1377110 (+) 378 WP_001502189.1 DUF454 family protein -
  GTP13_RS06665 apt 1377263..1377814 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GTP13_RS06670 dnaX 1377943..1379874 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  GTP13_RS06675 ybaB 1379927..1380256 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GTP13_RS06680 recR 1380256..1380861 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GTP13_RS06685 htpG 1380971..1382845 (+) 1875 WP_000678194.1 molecular chaperone HtpG -
  GTP13_RS06690 adk 1383026..1383670 (+) 645 WP_001220233.1 adenylate kinase -
  GTP13_RS06695 hemH 1383906..1384868 (+) 963 WP_001250125.1 ferrochelatase -
  GTP13_RS06700 aes 1384865..1385824 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=359428 GTP13_RS06680 WP_001195025.1 1380256..1380861(+) (recR) [Escherichia coli strain CAU16175]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=359428 GTP13_RS06680 WP_001195025.1 1380256..1380861(+) (recR) [Escherichia coli strain CAU16175]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment