Detailed information NTG0035564

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BAMTA208_RS12995
• Genome accession: NC_017188
• Coordinates: 2574122..2575390 (+)
• Length: 422 a.a.
• NCBI ID: WP_013353023.1
• Uniprot ID: A0A9P1NII9
• Organism: Bacillus amyloliquefaciens TA208
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2569122..2580390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMTA208_RS12975 (BAMTA208_13500)	-	2570493..2571113 (-)	621	WP_088030693.1	tetratricopeptide repeat protein	-
BAMTA208_RS12980 (BAMTA208_13505)	mnmA	2571201..2572316 (-)	1116	WP_014470768.1	tRNA 2-thiouridine(34) synthase MnmA	-
BAMTA208_RS12985 (BAMTA208_13510)	-	2572353..2573492 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
BAMTA208_RS12990 (BAMTA208_13515)	cymR	2573511..2573927 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
BAMTA208_RS12995 (BAMTA208_13520)	rarA	2574122..2575390 (+)	1269	WP_013353023.1	replication-associated recombination protein A	Machinery gene
BAMTA208_RS13000 (BAMTA208_13525)	-	2575508..2576272 (-)	765	WP_013353024.1	tRNA threonylcarbamoyladenosine dehydratase	-
BAMTA208_RS13005 (BAMTA208_13530)	aspS	2576599..2578377 (-)	1779	WP_013353025.1	aspartate--tRNA ligase	-
BAMTA208_RS13010 (BAMTA208_13535)	hisS	2578392..2579666 (-)	1275	WP_013353026.1	histidine--tRNA ligase	-
BAMTA208_RS20880 (BAMTA208_13545)	-	2580046..2580216 (-)	171	WP_014470770.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46685.56 Da
• Isoelectric Point: 8.2451

>NTDB_id=35564 BAMTA208_RS12995 WP_013353023.1 2574122..2575390(+) (rarA) [Bacillus amyloliquefaciens TA208]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALRR
ALTDEHRGLGSYSVSVDDEAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRSGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPEPLKNKQYYKP
KQTGKFEAAIKQVYEKLLKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=35564 BAMTA208_RS12995 WP_013353023.1 2574122..2575390(+) (rarA) [Bacillus amyloliquefaciens TA208]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGCGCAAAGCACCTATCATCCATGATCCTGTACGGACCGCCAGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGAAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAA
ATTGTCGTACAGGAAGCGAAAATGTCAGGTCAGGTCATCTTAATACTTGATGAAGTGCACAGGCTTGATAAGGGGAAGCA
GGATTTTCTCCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTCGAACTCGAACCGTTAACACCGGATCTGATCAAGCAGGCATTGAGAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGAAGCGATGGATCATTTCGCGCAAGG
GTGTGGAGGAGACGTCCGTTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTTTCCACAAAGGAATCAAGTGACGGCACGA
TCCGCATTACGCGGGAAACAGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAGACGGAGATGCGCATTAT
GACGTCTTATCCGCATTCCAAAAATCAATCCGCGGCTCAGACGCAAACGCCGCACTTCATTATTTAGCCCGACTGATCGA
AGCCGGCGATCTTGAAAGCATTTCAAGAAGACTTCTCGTAATCGCCTATGAAGATATCGGCCTTGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAGCGGATCGGCTTTCCCGAAGCGAGAATTCCGCTGGCGAATGCGGTA
ATCGAATTATGCCTTTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAAGCGCTCAAAGATATCAGATCGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGAGCCCAAGAGCTCGGACGCGGAATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCTGAACCGTTAAAAAACAAACAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGCTGAAACAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

3D structure

• AlphaFold DB: A0A9P1NII9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905