Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   CTCNB1_RS22460 Genome accession   NC_013446
Coordinates   4956284..4957420 (+) Length   378 a.a.
NCBI ID   WP_003068462.1    Uniprot ID   A0A5S4T690
Organism   Comamonas thiooxydans     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4951284..4962420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTCNB1_RS22440 (CtCNB1_4405) - 4952122..4952892 (+) 771 WP_012840071.1 TetR/AcrR family transcriptional regulator -
  CTCNB1_RS22445 (CtCNB1_4406) - 4952939..4954186 (+) 1248 WP_012840072.1 branched-chain amino acid ABC transporter substrate-binding protein -
  CTCNB1_RS22450 (CtCNB1_4407) - 4954355..4955077 (-) 723 WP_012840073.1 YggS family pyridoxal phosphate-dependent enzyme -
  CTCNB1_RS22455 (CtCNB1_4408) pilT 4955115..4956158 (+) 1044 WP_003068464.1 type IV pilus twitching motility protein PilT Machinery gene
  CTCNB1_RS22460 (CtCNB1_4409) pilU 4956284..4957420 (+) 1137 WP_003068462.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  CTCNB1_RS22465 (CtCNB1_4410) - 4957565..4958476 (+) 912 WP_012840074.1 NAD(P)-dependent oxidoreductase -
  CTCNB1_RS22470 (CtCNB1_4411) - 4958539..4959192 (-) 654 WP_012840075.1 BON domain-containing protein -
  CTCNB1_RS22475 (CtCNB1_4412) - 4959189..4959797 (-) 609 WP_003068456.1 SIS domain-containing protein -
  CTCNB1_RS22480 (CtCNB1_4413) - 4959887..4960288 (-) 402 WP_003068453.1 YraN family protein -
  CTCNB1_RS22485 (CtCNB1_4414) rsmI 4960288..4961211 (+) 924 WP_012840076.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42062.55 Da        Isoelectric Point: 6.7687

>NTDB_id=35565 CTCNB1_RS22460 WP_003068462.1 4956284..4957420(+) (pilU) [Comamonas thiooxydans]
MERDQASKFINDLLKLMVSRNGSDLFITAEFPPAIKIDGKVTKVSPQPLNQLHTLALARSIMNDRQVADFEHTKECNFAI
SPAGVGRFRVNAFMQQGKVGMVLRTIPSTLPTIDGLGVPQVLKEVTMTKRGLCILVGATGSGKSTTLAAMVDWRNENSFG
HIITVEDPVEFVHPHKNCVVTQREVGLDTESWEAALKNTLRQAPDVILMGEIRDRETMEHAIAFSETGHLCLATLHANSA
NQALDRIVNFFPEERRPQLLMDVSLNLRAIISQRLIPKQDSKGRVAAIEVMLNSPLIADLIFKGEVVEIKEIMKKSRNIG
MQTFDQALFDLFESNLITYEDALRNADSVNDLRLQIKLNSQRARTLDLAAGTEHLTIV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=35565 CTCNB1_RS22460 WP_003068462.1 4956284..4957420(+) (pilU) [Comamonas thiooxydans]
ATGGAACGCGATCAGGCCAGTAAATTCATCAACGATCTGCTCAAGCTCATGGTCAGCCGCAACGGCAGCGACCTGTTCAT
CACTGCAGAGTTTCCGCCCGCCATCAAGATTGACGGCAAAGTCACCAAGGTTTCGCCACAGCCGCTGAACCAGTTGCATA
CGCTGGCCCTGGCGCGTTCCATCATGAACGACAGGCAGGTGGCGGACTTCGAACACACCAAGGAGTGCAACTTCGCCATC
TCGCCTGCCGGTGTGGGGCGCTTCCGTGTCAACGCCTTCATGCAACAGGGCAAGGTCGGCATGGTGCTGCGTACCATTCC
CAGCACCCTGCCCACGATTGACGGCCTGGGCGTGCCGCAGGTGCTCAAGGAAGTGACCATGACCAAGCGCGGCCTGTGCA
TCCTGGTCGGCGCGACGGGCTCGGGCAAATCCACCACGCTGGCCGCCATGGTGGACTGGCGCAACGAGAACTCCTTCGGC
CACATCATCACCGTGGAAGATCCCGTGGAATTCGTGCATCCGCACAAGAACTGCGTGGTCACGCAACGCGAGGTGGGCCT
GGACACTGAGAGCTGGGAAGCCGCACTCAAGAACACGCTGCGCCAGGCGCCCGATGTGATTCTGATGGGCGAAATCCGCG
ACCGCGAAACCATGGAGCATGCGATTGCGTTCTCGGAAACCGGGCATCTATGTCTGGCCACGCTGCACGCCAACAGTGCC
AACCAGGCTCTGGACCGTATCGTCAACTTCTTCCCCGAAGAGCGCCGTCCGCAACTGCTGATGGACGTGTCGCTGAATCT
GCGGGCCATCATTTCCCAGCGCCTGATCCCCAAGCAGGACAGCAAGGGCCGTGTCGCCGCCATCGAGGTGATGCTCAACT
CTCCGCTGATCGCCGACCTGATCTTCAAGGGCGAAGTCGTCGAGATCAAGGAGATCATGAAGAAAAGCCGCAACATCGGC
ATGCAGACCTTTGACCAGGCGCTGTTCGACCTGTTCGAGTCCAATCTCATCACCTATGAAGACGCGCTGCGCAATGCAGA
CTCGGTCAACGACCTGCGTCTGCAGATCAAGCTCAACAGCCAGCGTGCCCGGACTCTGGACCTGGCGGCCGGCACCGAGC
ATCTGACCATCGTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(112-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4T690

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

60.656

96.825

0.587
  pilU Acinetobacter baylyi ADP1

55.71

94.974

0.529
  pilU Vibrio cholerae strain A1552

53.736

92.063

0.495
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.104

89.153

0.402
  pilT Pseudomonas aeruginosa PAK

44.51

89.153

0.397
  pilT Pseudomonas stutzeri DSM 10701

43.027

89.153

0.384
  pilT Acinetobacter nosocomialis M2

43.243

88.095

0.381
  pilT Acinetobacter baumannii strain A118

43.243

88.095

0.381
  pilT Acinetobacter baumannii D1279779

43.243

88.095

0.381
  pilT Legionella pneumophila strain ERS1305867

42.943

88.095

0.378
  pilT Legionella pneumophila strain Lp02

42.943

88.095

0.378
  pilT Acinetobacter baylyi ADP1

42.073

86.772

0.365

Multiple sequence alignment