Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DAIF1_RS04925 Genome accession   NZ_CP037883
Coordinates   1084589..1085626 (+) Length   345 a.a.
NCBI ID   WP_004147099.1    Uniprot ID   A0AAP7J2J0
Organism   Stenotrophomonas indicatrix strain DAIF1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1079589..1090626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAIF1_RS04900 (DAIF1_09750) soxR 1080883..1081317 (+) 435 WP_032951587.1 redox-sensitive transcriptional activator SoxR -
  DAIF1_RS04905 (DAIF1_09760) - 1081355..1081957 (-) 603 WP_025874043.1 short chain dehydrogenase -
  DAIF1_RS04910 (DAIF1_09770) - 1082056..1082931 (+) 876 WP_134832085.1 LysR family transcriptional regulator -
  DAIF1_RS04915 (DAIF1_09780) proC 1082986..1083807 (-) 822 WP_134832086.1 pyrroline-5-carboxylate reductase -
  DAIF1_RS04920 (DAIF1_09790) - 1083824..1084501 (-) 678 WP_032977304.1 YggS family pyridoxal phosphate-dependent enzyme -
  DAIF1_RS04925 (DAIF1_09800) pilT 1084589..1085626 (+) 1038 WP_004147099.1 type IV pilus twitching motility protein PilT Machinery gene
  DAIF1_RS04930 (DAIF1_09810) pilU 1085706..1086869 (+) 1164 WP_049467229.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  DAIF1_RS04935 (DAIF1_09820) - 1087011..1087994 (+) 984 WP_134832087.1 aldo/keto reductase -
  DAIF1_RS04940 (DAIF1_09830) - 1088124..1089023 (-) 900 WP_134832088.1 LysR family transcriptional regulator -
  DAIF1_RS04945 (DAIF1_09840) - 1089301..1089513 (+) 213 WP_025874036.1 DUF4287 domain-containing protein -
  DAIF1_RS04950 (DAIF1_09850) - 1089918..1090625 (+) 708 WP_099783084.1 YitT family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38658.41 Da        Isoelectric Point: 6.6654

>NTDB_id=350427 DAIF1_RS04925 WP_004147099.1 1084589..1085626(+) (pilT) [Stenotrophomonas indicatrix strain DAIF1]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLACPPLFREVIQQPQGLILVTGPTGSGKSTTLAAMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMMTLDQHL
QDLVKRSLITRNQAREYAKDKRLFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=350427 DAIF1_RS04925 WP_004147099.1 1084589..1085626(+) (pilT) [Stenotrophomonas indicatrix strain DAIF1]
ATGGATATCGCCGAGCTCTTGGCGTTTTCCGTAAAGAACAAAGCGTCCGACCTGCATCTGTCCGCAGGCCTGCCGCCGAT
GATCCGCGTGGACGGTGATGTTCGCCGGATCAACATTCCAGCCCTGGACCACAAGCAGGTCCACGCGCTGGTGTACGACA
TCATGTCCGACAAGCAGCGCCGCGATTACGAGGAATTCCTCGAAGTCGATTTCTCCTTCGAGATCCCGTCGCTGGCGCGC
TTCCGTGTCAATGCGTTCAACCAGAACCGTGGCGCCGGTGCGGTGTTCCGTACCATTCCGTCCGAAGTGCTGACATTGGA
AGACCTGGCCTGCCCGCCGCTGTTCCGCGAGGTGATCCAGCAACCGCAGGGCCTGATCCTGGTGACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGATCGACTACATCAACAAGAACGAATACGGCCATATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGATACGCATGGCTTCAATGA
AGCGCTGCGTTCGGCACTGCGTGAGGACCCGGACATCATCCTGGTCGGCGAACTGCGTGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCACTGCGCGCGGTCATTTCGCAGGC
GCTGCTGAAGAAGGTCGGTGGCGGTCGTACCGCTGCGTGGGAAATCATGGTGGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGGCCATCCAGACCGGCCAGCAGTACGGCATGATGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAATACGCCAAGGACAAGCGTCTGTTCGAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.651

99.71

0.794
  pilT Acinetobacter baumannii D1279779

79.651

99.71

0.794
  pilT Acinetobacter baumannii strain A118

79.651

99.71

0.794
  pilT Pseudomonas stutzeri DSM 10701

78.488

99.71

0.783
  pilT Acinetobacter baylyi ADP1

77.907

99.71

0.777
  pilT Pseudomonas aeruginosa PAK

79.056

98.261

0.777
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.821

95.362

0.675
  pilT Vibrio cholerae strain A1552

70.821

95.362

0.675
  pilT Neisseria meningitidis 8013

65.689

98.841

0.649
  pilT Neisseria gonorrhoeae MS11

65.396

98.841

0.646
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.565

100

0.496
  pilU Vibrio cholerae strain A1552

39.943

100

0.403
  pilU Pseudomonas stutzeri DSM 10701

40.413

98.261

0.397
  pilU Acinetobacter baylyi ADP1

39.706

98.551

0.391

Multiple sequence alignment