Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | DAIF1_RS04930 | Genome accession | NZ_CP037883 |
| Coordinates | 1085706..1086869 (+) | Length | 387 a.a. |
| NCBI ID | WP_049467229.1 | Uniprot ID | - |
| Organism | Stenotrophomonas indicatrix strain DAIF1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1080706..1091869
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAIF1_RS04900 (DAIF1_09750) | soxR | 1080883..1081317 (+) | 435 | WP_032951587.1 | redox-sensitive transcriptional activator SoxR | - |
| DAIF1_RS04905 (DAIF1_09760) | - | 1081355..1081957 (-) | 603 | WP_025874043.1 | short chain dehydrogenase | - |
| DAIF1_RS04910 (DAIF1_09770) | - | 1082056..1082931 (+) | 876 | WP_134832085.1 | LysR family transcriptional regulator | - |
| DAIF1_RS04915 (DAIF1_09780) | proC | 1082986..1083807 (-) | 822 | WP_134832086.1 | pyrroline-5-carboxylate reductase | - |
| DAIF1_RS04920 (DAIF1_09790) | - | 1083824..1084501 (-) | 678 | WP_032977304.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| DAIF1_RS04925 (DAIF1_09800) | pilT | 1084589..1085626 (+) | 1038 | WP_004147099.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| DAIF1_RS04930 (DAIF1_09810) | pilU | 1085706..1086869 (+) | 1164 | WP_049467229.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| DAIF1_RS04935 (DAIF1_09820) | - | 1087011..1087994 (+) | 984 | WP_134832087.1 | aldo/keto reductase | - |
| DAIF1_RS04940 (DAIF1_09830) | - | 1088124..1089023 (-) | 900 | WP_134832088.1 | LysR family transcriptional regulator | - |
| DAIF1_RS04945 (DAIF1_09840) | - | 1089301..1089513 (+) | 213 | WP_025874036.1 | DUF4287 domain-containing protein | - |
| DAIF1_RS04950 (DAIF1_09850) | - | 1089918..1090625 (+) | 708 | WP_099783084.1 | YitT family protein | - |
| DAIF1_RS04955 (DAIF1_09860) | - | 1090700..1091245 (-) | 546 | WP_025874034.1 | DNA-3-methyladenine glycosylase I | - |
Sequence
Protein
Download Length: 387 a.a. Molecular weight: 43182.62 Da Isoelectric Point: 6.6616
>NTDB_id=350428 DAIF1_RS04930 WP_049467229.1 1085706..1086869(+) (pilU) [Stenotrophomonas indicatrix strain DAIF1]
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR
Nucleotide
Download Length: 1164 bp
>NTDB_id=350428 DAIF1_RS04930 WP_049467229.1 1085706..1086869(+) (pilU) [Stenotrophomonas indicatrix strain DAIF1]
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACCTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACTGCCGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATTTCGCCGATCACCCAGA
CGCCACTGACGCCGCAGCAGAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAGAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGCGTCGGCCGCTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATTCCCACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCTACCGGTACCGGTAAATCAACCTCGCTGGCAGCGATGATCGGTTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGATCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCGCCGGATGTGA
TCATGATCGGCGAGGTGCGTACCCGCGAGGGCATGGACCACGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGTT
GATGGATCTGTCGCTGAACCTCAAGGGCGTGGTCGCGCAGCAGTTGATTCCTTCGCCGGATGGCCGCTCGCGCAAGGTGG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCACTGCGCTACGCCGATTCCCAGAACGAGGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGTTGGATGGCGTGGAGATTTCAGAGGTCCGGTAA
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACCTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACTGCCGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATTTCGCCGATCACCCAGA
CGCCACTGACGCCGCAGCAGAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAGAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGCGTCGGCCGCTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATTCCCACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCTACCGGTACCGGTAAATCAACCTCGCTGGCAGCGATGATCGGTTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGATCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCGCCGGATGTGA
TCATGATCGGCGAGGTGCGTACCCGCGAGGGCATGGACCACGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGTT
GATGGATCTGTCGCTGAACCTCAAGGGCGTGGTCGCGCAGCAGTTGATTCCTTCGCCGGATGGCCGCTCGCGCAAGGTGG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCACTGCGCTACGCCGATTCCCAGAACGAGGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGTTGGATGGCGTGGAGATTTCAGAGGTCCGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
67.575 |
94.832 |
0.641 |
| pilU | Acinetobacter baylyi ADP1 |
64.146 |
92.248 |
0.592 |
| pilU | Vibrio cholerae strain A1552 |
53.371 |
91.99 |
0.491 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.817 |
91.731 |
0.393 |