Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EYC57_RS05435 Genome accession   NZ_CP036256
Coordinates   1128509..1128922 (+) Length   137 a.a.
NCBI ID   WP_131074740.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BAI23     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1123509..1133922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC57_RS05415 (EYC57_05415) - 1123845..1125179 (+) 1335 WP_165480633.1 HAMP domain-containing sensor histidine kinase -
  EYC57_RS05420 (EYC57_05420) coaE 1125406..1126011 (-) 606 WP_131074738.1 dephospho-CoA kinase -
  EYC57_RS05425 (EYC57_05425) - 1126025..1126888 (-) 864 WP_131074739.1 A24 family peptidase -
  EYC57_RS05430 (EYC57_05430) pilC 1126895..1128154 (-) 1260 WP_131076128.1 type II secretion system F family protein Machinery gene
  EYC57_RS05435 (EYC57_05435) pilA 1128509..1128922 (+) 414 WP_131074740.1 pilin Machinery gene
  EYC57_RS05440 (EYC57_05440) - 1129142..1130653 (+) 1512 WP_341272984.1 phosphoethanolamine transferase -
  EYC57_RS05445 (EYC57_05445) - 1130724..1131293 (+) 570 WP_242628850.1 hypothetical protein -
  EYC57_RS05450 (EYC57_05450) - 1131263..1132789 (+) 1527 WP_053502734.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14131.34 Da        Isoelectric Point: 8.4866

>NTDB_id=347724 EYC57_RS05435 WP_131074740.1 1128509..1128922(+) (pilA) [Xanthomonas oryzae strain BAI23]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSEMAVLASGAKATIGENIANENAINTNACRGVATFNTATTN
TASLACANGIVTVTGTTKAASVILTYTPVLVDAGIKWTCSSSSPAKYLPAECRGSGT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=347724 EYC57_RS05435 WP_131074740.1 1128509..1128922(+) (pilA) [Xanthomonas oryzae strain BAI23]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGATTACACCATCCGCTCGCGTGTCTCTGAAATGGCTGTGCTTGCCTCGGGTGCCAAGGCGACGATTG
GTGAGAATATCGCCAATGAGAATGCGATTAATACTAATGCATGCCGCGGCGTTGCTACGTTTAATACCGCCACGACAAAT
ACTGCTTCCCTGGCGTGTGCCAACGGTATTGTCACTGTCACTGGTACGACTAAGGCTGCGAGCGTCATTCTGACCTACAC
TCCGGTCCTTGTGGACGCTGGCATCAAGTGGACCTGTTCCTCTTCCAGCCCAGCTAAGTACCTGCCGGCCGAATGCCGCG
GTTCGGGCACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

44.172

100

0.526
  comP Acinetobacter baylyi ADP1

46.939

100

0.504
  pilA2 Legionella pneumophila str. Paris

51.111

98.54

0.504
  pilA2 Legionella pneumophila strain ERS1305867

50.37

98.54

0.496
  pilA Vibrio parahaemolyticus RIMD 2210633

44.275

95.62

0.423
  pilE Neisseria gonorrhoeae strain FA1090

37.662

100

0.423
  pilA Acinetobacter baumannii strain A118

38

100

0.416
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.714

100

0.416
  pilA/pilA1 Eikenella corrodens VA1

37.748

100

0.416
  pilA Pseudomonas aeruginosa PAK

36

100

0.394
  pilA Haemophilus influenzae 86-028NP

38.571

100

0.394
  pilA Haemophilus influenzae Rd KW20

37.41

100

0.38
  pilA Vibrio cholerae C6706

33.766

100

0.38
  pilA Vibrio cholerae strain A1552

33.766

100

0.38
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

33.766

100

0.38
  pilA/pilAII Pseudomonas stutzeri DSM 10701

33.784

100

0.365

Multiple sequence alignment