Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ERL55_RS04025 Genome accession   NZ_CP035376
Coordinates   893028..894065 (+) Length   345 a.a.
NCBI ID   WP_100323593.1    Uniprot ID   -
Organism   Luteimonas sp. YGD11-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 888028..899065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERL55_RS03990 - 888057..888887 (-) 831 WP_241685828.1 kinase -
  ERL55_RS03995 pdxH 888911..889507 (+) 597 WP_129137192.1 pyridoxamine 5'-phosphate oxidase -
  ERL55_RS04000 - 889504..890325 (+) 822 WP_129135281.1 cobalamin-binding protein -
  ERL55_RS04005 - 890389..890784 (+) 396 WP_129135282.1 DoxX family protein -
  ERL55_RS04010 - 890804..891277 (-) 474 WP_164972112.1 DUF4426 domain-containing protein -
  ERL55_RS04015 proC 891285..892133 (-) 849 WP_129135284.1 pyrroline-5-carboxylate reductase -
  ERL55_RS04020 - 892151..892861 (-) 711 WP_129135285.1 YggS family pyridoxal phosphate-dependent enzyme -
  ERL55_RS04025 pilT 893028..894065 (+) 1038 WP_100323593.1 type IV pilus twitching motility protein PilT Machinery gene
  ERL55_RS04030 pilU 894153..895283 (+) 1131 WP_129135286.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ERL55_RS04035 - 895293..896249 (-) 957 WP_129135287.1 DUF72 domain-containing protein -
  ERL55_RS04040 - 896425..897045 (+) 621 WP_129135288.1 superoxide dismutase -
  ERL55_RS04045 - 897747..898205 (+) 459 WP_129135289.1 peptidylprolyl isomerase -
  ERL55_RS04050 - 898293..898859 (+) 567 WP_129135290.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38519.25 Da        Isoelectric Point: 6.7805

>NTDB_id=339415 ERL55_RS04025 WP_100323593.1 893028..894065(+) (pilT) [Luteimonas sp. YGD11-2]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPGLAR
FRVNAFNQNRGAGAVFRTVPSEVLTLEDLGCPPVFRQLIDQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHILTIED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDYILVGEMRDMETIRLALTAAETGHLVFATLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGIPAIRNLIREDKVAQMYSAIQTGQQHGMMTLDQHL
QDLVKRGLITRAQAKDYAKDKRTFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=339415 ERL55_RS04025 WP_100323593.1 893028..894065(+) (pilT) [Luteimonas sp. YGD11-2]
ATGGATATCGCCGAACTGTTGGCGTTTTCGGTCAAGAACAAGGCATCGGACCTGCATCTGTCGGCAGGCCTGCCGCCGAT
GATCCGCGTCGACGGCGACGTGCGCCGGATCAACATCCCCGCACTCGACCACAAGCAGGTGCACGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGTCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCGTTCGAGATCCCGGGCCTGGCGCGC
TTCCGTGTCAACGCGTTCAACCAGAACCGTGGCGCCGGCGCGGTGTTCCGTACCGTGCCGTCGGAAGTGCTGACGCTCGA
GGACCTCGGCTGTCCGCCGGTGTTCCGCCAGCTCATCGACCAGCCGCAGGGCCTGATCCTGGTGACCGGGCCGACGGGTT
CCGGCAAGTCCACCACGCTGGCGGCGATGGTCGACCACATCAACAAGAACGAGTACGGGCACATCCTCACCATCGAGGAC
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCATGGCTTCAACGA
GGCACTGCGTTCGGCACTGCGCGAGGACCCGGACTACATCCTGGTCGGCGAAATGCGCGACATGGAAACCATCCGCCTCG
CGCTGACTGCCGCCGAGACCGGCCACCTGGTGTTCGCCACCCTGCACACCTCGTCGGCCGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAGAAGCCGATGGTGCGTTCGATGCTGTCGGAGTCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGGCGCACCGCGGCCTGGGAAATCATGGTCGGCATCCCGGCCATCCGGAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTACTCGGCGATCCAGACCGGCCAGCAGCACGGCATGATGACGCTCGACCAGCACCTG
CAGGACCTGGTCAAGCGCGGACTGATCACCCGCGCGCAGGCCAAGGACTACGCCAAGGACAAGCGCACGTTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.36

99.71

0.791
  pilT Acinetobacter baumannii D1279779

79.36

99.71

0.791
  pilT Acinetobacter baumannii strain A118

79.36

99.71

0.791
  pilT Pseudomonas stutzeri DSM 10701

78.779

99.71

0.786
  pilT Pseudomonas aeruginosa PAK

77.616

99.71

0.774
  pilT Acinetobacter baylyi ADP1

77.616

99.71

0.774
  pilT Legionella pneumophila strain Lp02

71.802

99.71

0.716
  pilT Legionella pneumophila strain ERS1305867

71.802

99.71

0.716
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.517

95.362

0.672
  pilT Vibrio cholerae strain A1552

70.517

95.362

0.672
  pilT Neisseria meningitidis 8013

64.348

100

0.643
  pilT Neisseria gonorrhoeae MS11

64.058

100

0.641
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.565

100

0.496
  pilU Pseudomonas stutzeri DSM 10701

40.751

100

0.409
  pilU Vibrio cholerae strain A1552

40.173

100

0.403
  pilU Acinetobacter baylyi ADP1

40

98.551

0.394

Multiple sequence alignment