Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPSJM_RS05725 Genome accession   NC_014560
Coordinates   1205167..1206216 (+) Length   349 a.a.
NCBI ID   WP_000115468.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1200167..1211216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS05710 (HPSJM_05940) - 1201133..1202317 (-) 1185 Protein_1099 DUF874 family protein -
  HPSJM_RS05715 (HPSJM_05945) asd 1202750..1203790 (-) 1041 WP_000860893.1 aspartate-semialdehyde dehydrogenase -
  HPSJM_RS05720 (HPSJM_05950) hisS 1203777..1205105 (-) 1329 WP_000632534.1 histidine--tRNA ligase -
  HPSJM_RS05725 (HPSJM_05955) waaF 1205167..1206216 (+) 1050 WP_000115468.1 lipopolysaccharide heptosyltransferase II Regulator
  HPSJM_RS05730 (HPSJM_05960) - 1206363..1206743 (-) 381 WP_000744147.1 hypothetical protein -
  HPSJM_RS05735 (HPSJM_05965) - 1206961..1207950 (+) 990 WP_001187429.1 aldo/keto reductase -
  HPSJM_RS05740 (HPSJM_05970) fusA 1208508..1210586 (-) 2079 WP_000101872.1 elongation factor G -
  HPSJM_RS05745 (HPSJM_05975) rpsG 1210598..1211065 (-) 468 WP_001254358.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39503.22 Da        Isoelectric Point: 9.4627

>NTDB_id=33116 HPSJM_RS05725 WP_000115468.1 1205167..1206216(+) (waaF) [Helicobacter pylori SJM180]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVTAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWLASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSR
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKVQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHALLEEG

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=33116 HPSJM_RS05725 WP_000115468.1 1205167..1206216(+) (waaF) [Helicobacter pylori SJM180]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGGTAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCTGGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTAGCCGCTAGCACACAAACCCCCCTAATCGCTCTTTTTGGTCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGTTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
CTAAAAAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACGCTCTTTTAGA
AGAGGGTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.012

97.994

0.372

Multiple sequence alignment