Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DTPSY_RS02035 Genome accession   NC_011992
Coordinates   416988..418031 (-) Length   347 a.a.
NCBI ID   WP_011803881.1    Uniprot ID   A0AAX1WY06
Organism   [Acidovorax] ebreus TPSY     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411988..423031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTPSY_RS02005 (Dtpsy_0406) - 412287..412685 (+) 399 WP_012655451.1 YraN family protein -
  DTPSY_RS02010 (Dtpsy_0407) - 412744..413337 (+) 594 WP_012655452.1 SIS domain-containing protein -
  DTPSY_RS02015 (Dtpsy_0408) - 413334..414008 (+) 675 WP_012655453.1 BON domain-containing protein -
  DTPSY_RS02020 (Dtpsy_0409) - 414106..415035 (-) 930 WP_012655454.1 NAD(P)-dependent oxidoreductase -
  DTPSY_RS02025 (Dtpsy_0410) pilU 415099..416235 (-) 1137 WP_012655455.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  DTPSY_RS02030 (Dtpsy_0411) - 416282..416911 (-) 630 WP_012655456.1 cyclic nucleotide-binding domain-containing protein -
  DTPSY_RS02035 (Dtpsy_0412) pilT 416988..418031 (-) 1044 WP_011803881.1 type IV pilus twitching motility protein PilT Machinery gene
  DTPSY_RS02040 (Dtpsy_0413) - 418071..418787 (+) 717 WP_012655457.1 YggS family pyridoxal phosphate-dependent enzyme -
  DTPSY_RS02045 (Dtpsy_0414) - 418826..419962 (+) 1137 WP_012655458.1 aminotransferase class V-fold PLP-dependent enzyme -
  DTPSY_RS02050 (Dtpsy_0415) - 420042..421388 (+) 1347 WP_187148593.1 DUF445 domain-containing protein -
  DTPSY_RS02055 (Dtpsy_0416) - 421448..421903 (-) 456 WP_012655460.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38120.87 Da        Isoelectric Point: 6.7742

>NTDB_id=32831 DTPSY_RS02035 WP_011803881.1 416988..418031(-) (pilT) [[Acidovorax] ebreus TPSY]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDALDHKTVHAMVYDIMSDAQRKTYEEFLEVDFSFEIDGLAR
FRVNAFNQNRGAAAVFRTIPSKILTLEQLNAPKIFADLALKPRGLVLVTGPTGSGKSTTLAAMVNYLNESEYGHILTVED
PIEFVHESKKCLINQREVGPMTLSFAAALKSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMVRAMLSESLQAVISQTLCKTKDGSGRVAAHEIMLGTSAIRNLIREAKVAQMYSTIQTSNSVGMQTLDQN
LSDLVRRNIISPAEARSKAKIPENFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=32831 DTPSY_RS02035 WP_011803881.1 416988..418031(-) (pilT) [[Acidovorax] ebreus TPSY]
GTGGACATCACCCAATTGCTCGCCTTCAGCGTGAAGAACAAGGCGTCCGACCTGCACCTTTCCGCCGGCCTGCCGCCCAT
GATCCGGGTCCACGGGGACGTACGCCGCATCAACGTCGATGCACTGGACCACAAGACCGTCCACGCCATGGTGTACGACA
TCATGAGCGACGCCCAGCGCAAGACCTACGAAGAGTTCCTGGAAGTGGACTTTTCCTTCGAGATCGACGGCCTGGCGCGC
TTTCGCGTCAACGCGTTCAACCAGAACCGCGGCGCGGCCGCGGTGTTCCGTACCATTCCGAGCAAGATCCTGACGCTGGA
GCAGCTCAACGCGCCCAAGATTTTTGCCGACCTGGCGCTCAAGCCGCGCGGCCTGGTGCTGGTGACGGGCCCCACAGGCT
CGGGCAAGTCCACCACCCTGGCGGCCATGGTCAACTACCTCAACGAAAGCGAGTACGGCCACATCCTCACGGTGGAAGAC
CCGATCGAGTTCGTGCACGAGTCCAAGAAGTGCCTGATCAACCAGCGTGAAGTCGGCCCGATGACGCTGTCGTTCGCGGC
CGCGCTGAAGTCCGCCCTGCGCGAAGACCCGGACGCCATCCTGGTGGGCGAAATGCGCGACTTGGAAACCATCCGCCTGG
CCATGACCGCCGCGGAAACGGGCCACTTGGTGTTCGGCACGCTGCACACGTCCAGCGCCGCCAAGACCATCGACCGGATC
ATCGACGTCTTCCCCGCCGAAGAAAAGGAAATGGTGCGCGCGATGTTGTCGGAGTCGCTGCAGGCGGTGATCTCGCAGAC
GCTGTGCAAGACCAAGGACGGTTCTGGCCGCGTGGCGGCGCACGAGATCATGCTGGGCACGAGCGCCATCCGCAACCTGA
TCCGCGAGGCCAAGGTGGCGCAGATGTACTCCACCATCCAGACCAGCAACAGCGTGGGCATGCAGACGCTGGACCAGAAC
CTCTCCGACCTGGTGCGCCGCAACATCATCAGCCCGGCCGAGGCGCGCAGCAAGGCCAAGATTCCCGAGAACTTCCCCGG
CTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

76.522

99.424

0.761
  pilT Acinetobacter nosocomialis M2

76.522

99.424

0.761
  pilT Acinetobacter baumannii D1279779

76.522

99.424

0.761
  pilT Acinetobacter baumannii strain A118

76.522

99.424

0.761
  pilT Pseudomonas stutzeri DSM 10701

75.942

99.424

0.755
  pilT Acinetobacter baylyi ADP1

75.362

99.424

0.749
  pilT Legionella pneumophila strain ERS1305867

73.746

97.695

0.72
  pilT Legionella pneumophila strain Lp02

73.746

97.695

0.72
  pilT Neisseria gonorrhoeae MS11

67.826

99.424

0.674
  pilT Neisseria meningitidis 8013

67.826

99.424

0.674
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

67.742

98.271

0.666
  pilT Vibrio cholerae strain A1552

67.742

98.271

0.666
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

99.424

0.496
  pilU Vibrio cholerae strain A1552

44.776

96.542

0.432
  pilU Acinetobacter baylyi ADP1

41.04

99.712

0.409
  pilU Pseudomonas stutzeri DSM 10701

41.791

96.542

0.403

Multiple sequence alignment