Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   DTPSY_RS02025 Genome accession   NC_011992
Coordinates   415099..416235 (-) Length   378 a.a.
NCBI ID   WP_012655455.1    Uniprot ID   A0A2S4KET9
Organism   [Acidovorax] ebreus TPSY     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410099..421235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTPSY_RS01995 (Dtpsy_0404) - 410211..411140 (+) 930 WP_041838777.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  DTPSY_RS02000 (Dtpsy_0405) rsmI 411349..412287 (-) 939 WP_041838778.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DTPSY_RS02005 (Dtpsy_0406) - 412287..412685 (+) 399 WP_012655451.1 YraN family protein -
  DTPSY_RS02010 (Dtpsy_0407) - 412744..413337 (+) 594 WP_012655452.1 SIS domain-containing protein -
  DTPSY_RS02015 (Dtpsy_0408) - 413334..414008 (+) 675 WP_012655453.1 BON domain-containing protein -
  DTPSY_RS02020 (Dtpsy_0409) - 414106..415035 (-) 930 WP_012655454.1 NAD(P)-dependent oxidoreductase -
  DTPSY_RS02025 (Dtpsy_0410) pilU 415099..416235 (-) 1137 WP_012655455.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  DTPSY_RS02030 (Dtpsy_0411) - 416282..416911 (-) 630 WP_012655456.1 cyclic nucleotide-binding domain-containing protein -
  DTPSY_RS02035 (Dtpsy_0412) pilT 416988..418031 (-) 1044 WP_011803881.1 type IV pilus twitching motility protein PilT Machinery gene
  DTPSY_RS02040 (Dtpsy_0413) - 418071..418787 (+) 717 WP_012655457.1 YggS family pyridoxal phosphate-dependent enzyme -
  DTPSY_RS02045 (Dtpsy_0414) - 418826..419962 (+) 1137 WP_012655458.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 41729.18 Da        Isoelectric Point: 6.9080

>NTDB_id=32830 DTPSY_RS02025 WP_012655455.1 415099..416235(-) (pilU) [[Acidovorax] ebreus TPSY]
MERDQASKFINDLLKLMVSRGGSDLFITAEFPPAIKVDGKVTKVSPQPLTPNHTLTLARAIMSDKQVADFERTKECNFAI
SPAGVGRFRVNAFVQQGRVGMVLRTIPLTLPTIDGLGVPQVLKEVTMTKRGLCILVGATGSGKSTTLAAMLDWRNENSFG
HIITVEDPVEFVHPHKNCVITQREVGLDTDSWEAALKNTLRQAPDVILMGEIRDRETMEHAVAFAETGHLCLATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLKALISQRLIPKQDGKGRAAAVEVMLNTPLIADLIFKGEVAEIKEIMKKSRNLG
MQTFDQALFDLFEANVISYEDALRNADSVNDLRLQIKLSSQRAKTTDLASGTEHFAIV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=32830 DTPSY_RS02025 WP_012655455.1 415099..416235(-) (pilU) [[Acidovorax] ebreus TPSY]
ATGGAACGGGATCAGGCGAGTAAATTCATCAACGATCTGCTCAAGCTGATGGTCAGCCGCGGGGGGAGCGACCTTTTCAT
CACGGCGGAGTTTCCGCCGGCGATCAAGGTCGACGGCAAGGTCACCAAGGTCTCTCCCCAGCCTCTGACGCCCAACCATA
CGCTCACGCTGGCGCGCGCCATCATGAGCGACAAGCAGGTGGCCGACTTCGAGCGCACCAAGGAGTGCAACTTTGCCATC
TCGCCCGCGGGCGTGGGCCGGTTCCGCGTGAACGCCTTCGTGCAGCAGGGCCGCGTGGGCATGGTGCTGCGGACGATTCC
GCTCACGCTGCCCACCATCGACGGCCTGGGCGTTCCGCAGGTGCTCAAGGAAGTCACCATGACCAAGCGCGGACTGTGCA
TCCTGGTCGGCGCGACGGGCTCGGGCAAGTCCACCACGCTGGCCGCCATGCTGGACTGGCGCAACGAGAACTCCTTCGGC
CACATCATCACGGTGGAAGACCCGGTGGAATTCGTGCATCCGCACAAGAACTGCGTGATCACGCAGCGCGAGGTGGGCCT
GGACACCGACAGCTGGGAGGCGGCCCTCAAAAACACCCTGCGTCAGGCGCCGGACGTGATCCTGATGGGCGAAATCCGCG
ACCGCGAGACCATGGAGCACGCCGTGGCGTTTGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGCTGGACCGGATCATCAACTTCTTCCCCGAGGAGCGGCGCGCCCAGTTGCTGATGGACCTGTCGCTGAACCT
CAAGGCACTGATCTCGCAGCGCCTGATTCCCAAGCAGGACGGCAAGGGGCGCGCGGCCGCCGTCGAGGTGATGCTGAACA
CGCCGCTGATCGCCGACCTCATCTTCAAGGGCGAGGTGGCCGAGATCAAGGAAATCATGAAGAAGAGCCGCAACCTGGGC
ATGCAGACCTTCGACCAGGCACTGTTCGACCTGTTCGAGGCCAACGTGATCAGCTATGAGGATGCCCTGCGCAACGCCGA
CTCGGTGAACGACCTGCGCCTGCAGATCAAGCTCAGCAGCCAGCGTGCCAAGACGACGGACCTGGCCTCGGGCACCGAGC
ATTTCGCCATCGTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(120-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S4KET9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

64.183

92.328

0.593
  pilU Acinetobacter baylyi ADP1

58.939

94.709

0.558
  pilU Vibrio cholerae strain A1552

53.168

96.032

0.511
  pilT Pseudomonas aeruginosa PAK

45.994

89.153

0.41
  pilT Acinetobacter baumannii strain A118

45.946

88.095

0.405
  pilT Acinetobacter nosocomialis M2

45.946

88.095

0.405
  pilT Acinetobacter baumannii D1279779

45.946

88.095

0.405
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.51

89.153

0.397
  pilT Pseudomonas stutzeri DSM 10701

44.214

89.153

0.394
  pilT Legionella pneumophila strain Lp02

43.844

88.095

0.386
  pilT Legionella pneumophila strain ERS1305867

43.844

88.095

0.386
  pilT Acinetobacter baylyi ADP1

43.544

88.095

0.384
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

42.169

87.831

0.37
  pilT Vibrio cholerae strain A1552

42.169

87.831

0.37

Multiple sequence alignment