Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SWP_RS16360 Genome accession   NC_011566
Coordinates   3886817..3887854 (-) Length   345 a.a.
NCBI ID   WP_044556009.1    Uniprot ID   -
Organism   Shewanella piezotolerans WP3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3881817..3892854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SWP_RS16340 (swp_3668) xni 3882217..3882984 (+) 768 WP_020913700.1 flap endonuclease Xni -
  SWP_RS16345 (swp_3669) - 3883091..3883480 (+) 390 WP_020913701.1 DUF3192 domain-containing protein -
  SWP_RS16350 (swp_3670) hemH 3884263..3885276 (-) 1014 WP_020913702.1 ferrochelatase -
  SWP_RS16355 (swp_3671) pilU 3885691..3886803 (-) 1113 WP_020913703.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  SWP_RS16360 (swp_3672) pilT 3886817..3887854 (-) 1038 WP_044556009.1 type IV pilus twitching motility protein PilT Machinery gene
  SWP_RS16365 (swp_3673) - 3887890..3888627 (+) 738 WP_044556010.1 YggS family pyridoxal phosphate-dependent enzyme -
  SWP_RS16370 (swp_3674) proC 3888747..3889565 (+) 819 WP_020913706.1 pyrroline-5-carboxylate reductase -
  SWP_RS16375 (swp_3675) - 3889597..3890145 (+) 549 WP_020913707.1 YggT family protein -
  SWP_RS16380 (swp_3676) yggU 3890145..3890432 (+) 288 WP_143711207.1 DUF167 family protein YggU -
  SWP_RS16385 (swp_3677) - 3890516..3890950 (+) 435 WP_020913709.1 DUF4426 domain-containing protein -
  SWP_RS16390 (swp_3678) rdgB 3891173..3891772 (+) 600 WP_020913710.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38282.78 Da        Isoelectric Point: 6.7842

>NTDB_id=31810 SWP_RS16360 WP_044556009.1 3886817..3887854(-) (pilT) [Shewanella piezotolerans WP3]
MEITELLAFSVKHNASDLHLSAGVSPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPGLAR
FRVNAFNQSRGSAAVFRTIPSDILSLEQLGAPEIFKKISSFPRGLVLVTGPTGSGKSTTLAAMVDYINENRHDHILTIED
PIEFVHQNKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPEGEKGMVRTMLSESLQAVISQALIKKVGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLDQCL
QNLVNRGQISREDALLKSSNKQTNF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=31810 SWP_RS16360 WP_044556009.1 3886817..3887854(-) (pilT) [Shewanella piezotolerans WP3]
ATGGAAATCACAGAGTTACTTGCCTTTAGTGTAAAGCACAATGCATCAGATCTACACCTTTCTGCGGGGGTTTCTCCTAT
GATCCGTGTTGATGGTGAAGTGAGGAAGATAAATCTTCCCGCTTTAGACCATCAAGGTGTTCACAGTCTTGTGTACGATA
TTATGAATGATAAGCAGCGCAAAGATTATGAAGAACATCTAGAGATAGATTTCTCATTTGAAGTGCCTGGCCTTGCCCGT
TTTCGTGTTAATGCCTTTAACCAATCTCGTGGTTCTGCAGCTGTATTTCGTACCATTCCAAGCGATATCTTAAGTTTAGA
ACAGTTAGGGGCGCCAGAGATCTTCAAGAAGATATCGAGTTTCCCGCGCGGACTGGTTTTGGTAACCGGCCCTACGGGGT
CAGGTAAAAGCACCACCTTGGCTGCAATGGTTGATTACATTAATGAGAATAGACACGACCACATATTAACGATTGAAGAC
CCGATAGAATTTGTACATCAAAACAAACAATGCTTGATCAACCAACGAGAAGTGCATCGTCATACTCACAGTTTTAATGC
TGCTTTGCGTAGTGCATTACGTGAAGATCCAGACGTTATTCTCGTCGGTGAAATGCGAGATTTAGAAACCATTAGACTGG
CAATGACCGCTGCTGAAACTGGTCACTTGGTATTTGGCACCTTGCATACGACCTCTGCCGCAAAAACGATTGACCGTGTA
GTCGATGTATTCCCTGAAGGTGAAAAAGGCATGGTAAGGACTATGCTATCCGAATCACTGCAAGCGGTGATCTCTCAAGC
GCTGATCAAAAAAGTGGGTGGTGGTCGAGTTGCTGCGCATGAGATCATGATGGGCACACCAGCAATACGTAACTTGATCC
GAGAAGATAAAGTCGCGCAAATGTATTCAGCTATTCAAACGGGGATGGCACATGGGATGCAAACATTGGATCAGTGTTTA
CAAAACTTAGTCAATCGCGGCCAAATTAGCCGTGAAGACGCGCTGCTCAAGAGTTCAAATAAGCAAACCAATTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.825

99.13

0.791
  pilT Acinetobacter baumannii D1279779

79.825

99.13

0.791
  pilT Acinetobacter baumannii strain A118

79.825

99.13

0.791
  pilT Pseudomonas stutzeri DSM 10701

77.101

100

0.771
  pilT Pseudomonas aeruginosa PAK

79.341

96.812

0.768
  pilT Acinetobacter baylyi ADP1

79.091

95.652

0.757
  pilT Legionella pneumophila strain Lp02

74.487

98.841

0.736
  pilT Legionella pneumophila strain ERS1305867

74.487

98.841

0.736
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

72.973

96.522

0.704
  pilT Vibrio cholerae strain A1552

72.973

96.522

0.704
  pilT Neisseria meningitidis 8013

68.605

99.71

0.684
  pilT Neisseria gonorrhoeae MS11

68.314

99.71

0.681
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.853

98.261

0.49
  pilU Pseudomonas stutzeri DSM 10701

41.983

99.42

0.417
  pilU Vibrio cholerae strain A1552

41.667

97.391

0.406
  pilU Acinetobacter baylyi ADP1

40.059

97.681

0.391

Multiple sequence alignment