Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   EW995_RS07605 Genome accession   NZ_CP035884
Coordinates   1573189..1574169 (-) Length   326 a.a.
NCBI ID   WP_001324408.1    Uniprot ID   -
Organism   Escherichia coli strain LSN03-016011/A     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568189..1579169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS07575 yggI 1568865..1569362 (+) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -
  EW995_RS07580 endA 1569457..1570164 (+) 708 WP_000286500.1 deoxyribonuclease I -
  EW995_RS07585 rsmE 1570244..1570975 (+) 732 WP_001222508.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  EW995_RS07590 gshB 1570988..1571938 (+) 951 WP_000593273.1 glutathione synthase -
  EW995_RS07595 yqgE 1572047..1572610 (+) 564 WP_001053178.1 YqgE/AlgH family protein -
  EW995_RS07600 ruvX 1572610..1573026 (+) 417 WP_000017106.1 Holliday junction resolvase RuvX -
  EW995_RS07605 pilT 1573189..1574169 (-) 981 WP_001324408.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  EW995_RS07610 yggS 1574187..1574891 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  EW995_RS07615 yggT 1574909..1575475 (+) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  EW995_RS07620 yggU 1575472..1575762 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  EW995_RS07625 rdgB 1575770..1576363 (+) 594 WP_001174743.1 XTP/dITP diphosphatase -
  EW995_RS07630 hemW 1576356..1577492 (+) 1137 WP_001514538.1 radical SAM family heme chaperone HemW -
  EW995_RS07635 yggM 1577647..1578654 (-) 1008 WP_000745217.1 DUF1202 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35873.07 Da        Isoelectric Point: 5.5857

>NTDB_id=306449 EW995_RS07605 WP_001324408.1 1573189..1574169(-) (pilT) [Escherichia coli strain LSN03-016011/A]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGCVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSFQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=306449 EW995_RS07605 WP_001324408.1 1573189..1574169(-) (pilT) [Escherichia coli strain LSN03-016011/A]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGTGGCAGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAAAATGGCCAGCTGGATTTTGCCGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTTAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATTGGTTTGCACTGTATGACTTTCGCATCGGGGTTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTACGTGACAGTGAGACAATCCGTCTGGCGCTAACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCAACCTTACATACGCGTGGTGCCGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCAGGTAGTTTACGGGCCGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGATGCGTGGCGCTGTTTGAATTATTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTTTCAGCAGCGA
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.235

100

0.494
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.235

100

0.494
  pilT Neisseria meningitidis 8013

48.476

100

0.488
  pilT Neisseria gonorrhoeae MS11

48.171

100

0.485
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

46.177

100

0.463
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408
  pilU Vibrio cholerae strain A1552

39.21

100

0.396
  pilU Pseudomonas stutzeri DSM 10701

37.273

100

0.377
  pilB Legionella pneumophila strain ERS1305867

30.89

100

0.362

Multiple sequence alignment