Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | LCHO_RS08135 | Genome accession | NC_010524 |
| Coordinates | 1734180..1735316 (+) | Length | 378 a.a. |
| NCBI ID | WP_012346660.1 | Uniprot ID | B1XXB8 |
| Organism | Leptothrix cholodnii SP-6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1729180..1740316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCHO_RS08120 (Lcho_1629) | - | 1731849..1732328 (+) | 480 | WP_012346657.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LCHO_RS08125 (Lcho_1630) | - | 1732360..1733049 (-) | 690 | WP_012346658.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LCHO_RS08130 (Lcho_1631) | pilT | 1733111..1734154 (+) | 1044 | WP_012346659.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LCHO_RS08135 (Lcho_1632) | pilU | 1734180..1735316 (+) | 1137 | WP_012346660.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LCHO_RS08140 (Lcho_1633) | - | 1735321..1737231 (+) | 1911 | WP_012346661.1 | sensor histidine kinase | - |
| LCHO_RS08145 (Lcho_1634) | - | 1737228..1737938 (-) | 711 | WP_012346662.1 | response regulator transcription factor | - |
| LCHO_RS24120 (Lcho_1635) | - | 1738128..1739582 (+) | 1455 | WP_012346663.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42022.22 Da Isoelectric Point: 6.7789
>NTDB_id=30440 LCHO_RS08135 WP_012346660.1 1734180..1735316(+) (pilU) [Leptothrix cholodnii SP-6]
MERDQASKFINDLLRLLVSRGGSDLFLTSEFPPAIKVDGKVTKVSPQALSGQHTVALARAVMNDKQTAEFERTKECNFAI
SPQGVGRFRVNAFVQQGQVGMVLRTIPRELPTVDKLGLPNVLKDIAMTKRGLVIMVGATGSGKSTTLAAMVDHRNITAYD
HIITIEDPVEFVHPHKNCIVTQREVGIDTLDWGAALKNTLRQAPDVILMGEIRDRETMEHAVAFAETGHLCMATLHANSA
NQALDRIVNFFPEERRDQLLMDLSLNLKAMVSQRLLPREEGNGRIAAVEILLNTPLITDLIFKGEVSEIKEVMKKSREHG
MQTFDQALFALYEGHYVSYEDALRNADSVNDLRLQIKLHSSRARNTDFGSGTEHLSIV
MERDQASKFINDLLRLLVSRGGSDLFLTSEFPPAIKVDGKVTKVSPQALSGQHTVALARAVMNDKQTAEFERTKECNFAI
SPQGVGRFRVNAFVQQGQVGMVLRTIPRELPTVDKLGLPNVLKDIAMTKRGLVIMVGATGSGKSTTLAAMVDHRNITAYD
HIITIEDPVEFVHPHKNCIVTQREVGIDTLDWGAALKNTLRQAPDVILMGEIRDRETMEHAVAFAETGHLCMATLHANSA
NQALDRIVNFFPEERRDQLLMDLSLNLKAMVSQRLLPREEGNGRIAAVEILLNTPLITDLIFKGEVSEIKEVMKKSREHG
MQTFDQALFALYEGHYVSYEDALRNADSVNDLRLQIKLHSSRARNTDFGSGTEHLSIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=30440 LCHO_RS08135 WP_012346660.1 1734180..1735316(+) (pilU) [Leptothrix cholodnii SP-6]
ATGGAACGCGACCAGGCATCCAAGTTCATCAACGACCTGCTGCGCCTGCTGGTCTCGCGCGGCGGCTCCGACCTGTTCCT
GACGTCGGAGTTTCCGCCGGCGATCAAGGTCGACGGCAAGGTCACCAAGGTGTCGCCGCAGGCGCTGTCGGGCCAGCACA
CGGTGGCGCTGGCGCGCGCGGTGATGAACGACAAGCAGACCGCCGAGTTCGAGCGCACCAAGGAGTGCAACTTCGCGATC
TCGCCGCAGGGCGTGGGGCGTTTCCGGGTCAATGCCTTCGTGCAGCAGGGCCAGGTCGGCATGGTGTTGCGCACCATCCC
GCGCGAACTGCCCACGGTCGACAAGCTCGGCCTGCCGAACGTGCTCAAGGACATCGCGATGACCAAGCGCGGGCTGGTCA
TCATGGTGGGCGCCACCGGCTCGGGCAAGAGCACGACGCTGGCGGCGATGGTCGACCACCGCAACATCACGGCTTACGAC
CACATCATCACGATCGAGGATCCGGTCGAGTTCGTGCACCCGCACAAGAACTGCATCGTCACCCAGCGCGAGGTCGGCAT
CGACACGCTGGACTGGGGCGCGGCGCTGAAGAACACGCTGCGCCAGGCGCCCGACGTGATCCTGATGGGCGAGATCCGCG
ACCGCGAGACGATGGAGCACGCGGTCGCCTTCGCCGAGACCGGCCACCTGTGCATGGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGCTCGACCGCATCGTCAACTTCTTCCCCGAGGAACGCCGCGACCAGCTGCTGATGGACCTGTCGCTCAATCT
CAAGGCGATGGTCAGCCAGCGCCTGCTGCCGCGCGAGGAAGGCAACGGCCGCATCGCCGCGGTCGAGATCCTGCTCAACA
CGCCGCTGATCACCGACCTGATCTTCAAGGGCGAGGTCTCCGAGATCAAGGAAGTGATGAAGAAGAGCCGCGAGCACGGC
ATGCAGACCTTCGACCAGGCGCTGTTCGCGCTCTACGAAGGCCATTACGTGAGCTACGAAGACGCGCTGCGCAACGCCGA
CTCGGTCAACGACCTGCGCCTGCAGATCAAGCTGCACAGCAGCCGTGCGCGCAACACCGATTTCGGCTCCGGCACCGAGC
ACCTGTCGATCGTCTGA
ATGGAACGCGACCAGGCATCCAAGTTCATCAACGACCTGCTGCGCCTGCTGGTCTCGCGCGGCGGCTCCGACCTGTTCCT
GACGTCGGAGTTTCCGCCGGCGATCAAGGTCGACGGCAAGGTCACCAAGGTGTCGCCGCAGGCGCTGTCGGGCCAGCACA
CGGTGGCGCTGGCGCGCGCGGTGATGAACGACAAGCAGACCGCCGAGTTCGAGCGCACCAAGGAGTGCAACTTCGCGATC
TCGCCGCAGGGCGTGGGGCGTTTCCGGGTCAATGCCTTCGTGCAGCAGGGCCAGGTCGGCATGGTGTTGCGCACCATCCC
GCGCGAACTGCCCACGGTCGACAAGCTCGGCCTGCCGAACGTGCTCAAGGACATCGCGATGACCAAGCGCGGGCTGGTCA
TCATGGTGGGCGCCACCGGCTCGGGCAAGAGCACGACGCTGGCGGCGATGGTCGACCACCGCAACATCACGGCTTACGAC
CACATCATCACGATCGAGGATCCGGTCGAGTTCGTGCACCCGCACAAGAACTGCATCGTCACCCAGCGCGAGGTCGGCAT
CGACACGCTGGACTGGGGCGCGGCGCTGAAGAACACGCTGCGCCAGGCGCCCGACGTGATCCTGATGGGCGAGATCCGCG
ACCGCGAGACGATGGAGCACGCGGTCGCCTTCGCCGAGACCGGCCACCTGTGCATGGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGCTCGACCGCATCGTCAACTTCTTCCCCGAGGAACGCCGCGACCAGCTGCTGATGGACCTGTCGCTCAATCT
CAAGGCGATGGTCAGCCAGCGCCTGCTGCCGCGCGAGGAAGGCAACGGCCGCATCGCCGCGGTCGAGATCCTGCTCAACA
CGCCGCTGATCACCGACCTGATCTTCAAGGGCGAGGTCTCCGAGATCAAGGAAGTGATGAAGAAGAGCCGCGAGCACGGC
ATGCAGACCTTCGACCAGGCGCTGTTCGCGCTCTACGAAGGCCATTACGTGAGCTACGAAGACGCGCTGCGCAACGCCGA
CTCGGTCAACGACCTGCGCCTGCAGATCAAGCTGCACAGCAGCCGTGCGCGCAACACCGATTTCGGCTCCGGCACCGAGC
ACCTGTCGATCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
62.931 |
92.063 |
0.579 |
| pilU | Acinetobacter baylyi ADP1 |
57.143 |
92.593 |
0.529 |
| pilU | Vibrio cholerae strain A1552 |
53.994 |
96.032 |
0.519 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.071 |
89.153 |
0.429 |
| pilT | Pseudomonas stutzeri DSM 10701 |
45.697 |
89.153 |
0.407 |
| pilT | Pseudomonas aeruginosa PAK |
45.104 |
89.153 |
0.402 |
| pilT | Acinetobacter baumannii D1279779 |
44.745 |
88.095 |
0.394 |
| pilT | Acinetobacter baumannii strain A118 |
44.745 |
88.095 |
0.394 |
| pilT | Acinetobacter nosocomialis M2 |
44.745 |
88.095 |
0.394 |
| pilT | Acinetobacter baylyi ADP1 |
45.768 |
84.392 |
0.386 |
| pilT | Legionella pneumophila strain Lp02 |
43.243 |
88.095 |
0.381 |
| pilT | Legionella pneumophila strain ERS1305867 |
43.243 |
88.095 |
0.381 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.479 |
83.862 |
0.373 |
| pilT | Vibrio cholerae strain A1552 |
44.479 |
83.862 |
0.373 |
| pilT | Neisseria gonorrhoeae MS11 |
40.708 |
89.683 |
0.365 |
| pilT | Neisseria meningitidis 8013 |
40.708 |
89.683 |
0.365 |