Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LCHO_RS08130 | Genome accession | NC_010524 |
| Coordinates | 1733111..1734154 (+) | Length | 347 a.a. |
| NCBI ID | WP_012346659.1 | Uniprot ID | - |
| Organism | Leptothrix cholodnii SP-6 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1728111..1739154
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCHO_RS08115 (Lcho_1628) | - | 1728624..1731713 (-) | 3090 | WP_012346656.1 | L-glutamate gamma-semialdehyde dehydrogenase | - |
| LCHO_RS08120 (Lcho_1629) | - | 1731849..1732328 (+) | 480 | WP_012346657.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LCHO_RS08125 (Lcho_1630) | - | 1732360..1733049 (-) | 690 | WP_012346658.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LCHO_RS08130 (Lcho_1631) | pilT | 1733111..1734154 (+) | 1044 | WP_012346659.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LCHO_RS08135 (Lcho_1632) | pilU | 1734180..1735316 (+) | 1137 | WP_012346660.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LCHO_RS08140 (Lcho_1633) | - | 1735321..1737231 (+) | 1911 | WP_012346661.1 | sensor histidine kinase | - |
| LCHO_RS08145 (Lcho_1634) | - | 1737228..1737938 (-) | 711 | WP_012346662.1 | response regulator transcription factor | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38214.89 Da Isoelectric Point: 7.0603
>NTDB_id=30439 LCHO_RS08130 WP_012346659.1 1733111..1734154(+) (pilT) [Leptothrix cholodnii SP-6]
MDITQLLAFSVRNKASDLHLSAGLPPMIRVHGDVRRINVDPLGHKNVHEMVYDVMNDAQRKVFEETLECDFSFEIQGLSR
FRVNAFNHNRGAGAVFRTIPSKILTLEDLNCPKVFAELSLKPRGMVLVTGPTGSGKSTTLAAMVNHRNENEYGHILTVED
PIEFVHESKKCLINQREVGAQTLSFSNALRSALREDPDAILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRM
VDVFPAAEKEMVRAMLSESLVAVISQSLLKTRDGSGRVAAHEIMLGTAAIRNLIRENKVAQMYSIIQTGQAQGMQTLDQC
LADLVRRGQVAASEARTMARMPENFPG
MDITQLLAFSVRNKASDLHLSAGLPPMIRVHGDVRRINVDPLGHKNVHEMVYDVMNDAQRKVFEETLECDFSFEIQGLSR
FRVNAFNHNRGAGAVFRTIPSKILTLEDLNCPKVFAELSLKPRGMVLVTGPTGSGKSTTLAAMVNHRNENEYGHILTVED
PIEFVHESKKCLINQREVGAQTLSFSNALRSALREDPDAILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRM
VDVFPAAEKEMVRAMLSESLVAVISQSLLKTRDGSGRVAAHEIMLGTAAIRNLIRENKVAQMYSIIQTGQAQGMQTLDQC
LADLVRRGQVAASEARTMARMPENFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=30439 LCHO_RS08130 WP_012346659.1 1733111..1734154(+) (pilT) [Leptothrix cholodnii SP-6]
ATGGACATCACACAGCTGCTGGCGTTTTCGGTCCGCAACAAGGCTTCGGATCTGCACCTCTCCGCCGGTTTGCCGCCGAT
GATCCGGGTGCATGGCGACGTGCGGCGCATCAACGTCGATCCGCTCGGGCACAAGAACGTGCACGAGATGGTCTACGACG
TCATGAACGACGCCCAGCGCAAGGTCTTCGAGGAGACGCTGGAGTGCGACTTCTCGTTCGAGATCCAGGGCCTGTCGCGC
TTCCGGGTCAATGCCTTCAACCACAACCGCGGCGCCGGCGCGGTGTTCCGGACCATCCCGAGCAAGATCCTGACGCTCGA
GGACCTGAACTGCCCGAAGGTGTTCGCCGAGCTGTCGCTCAAGCCGCGCGGCATGGTGCTGGTGACCGGGCCGACCGGCT
CGGGCAAGAGCACCACGCTGGCGGCGATGGTCAACCACCGCAACGAGAACGAATACGGTCACATCCTGACGGTCGAAGAC
CCGATCGAGTTCGTGCACGAGTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGGCGCAGACGCTGTCGTTCTCGAA
CGCGCTGCGCTCGGCGCTGCGCGAGGATCCGGACGCGATCCTGGTGGGTGAGCTGCGCGATCTCGAGACCATCCGCCTGG
CGCTGACCGCCGCCGAAACCGGCCACCTGGTGTTCGGCACGCTGCACACCTCGAGCGCGGCCAAGACGATCGACCGCATG
GTCGACGTGTTCCCCGCGGCCGAGAAGGAGATGGTGCGGGCGATGCTGTCGGAGTCGCTGGTGGCGGTGATCTCGCAGTC
CCTGCTCAAGACCCGCGACGGCAGCGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACCGCCGCCATCCGCAACCTGA
TCCGCGAGAACAAGGTGGCGCAGATGTACTCGATCATCCAGACCGGCCAGGCGCAGGGCATGCAGACGCTCGACCAGTGC
CTGGCCGATCTGGTGCGGCGCGGCCAGGTCGCGGCGTCCGAGGCGCGCACGATGGCGCGCATGCCCGAGAACTTCCCGGG
TTGA
ATGGACATCACACAGCTGCTGGCGTTTTCGGTCCGCAACAAGGCTTCGGATCTGCACCTCTCCGCCGGTTTGCCGCCGAT
GATCCGGGTGCATGGCGACGTGCGGCGCATCAACGTCGATCCGCTCGGGCACAAGAACGTGCACGAGATGGTCTACGACG
TCATGAACGACGCCCAGCGCAAGGTCTTCGAGGAGACGCTGGAGTGCGACTTCTCGTTCGAGATCCAGGGCCTGTCGCGC
TTCCGGGTCAATGCCTTCAACCACAACCGCGGCGCCGGCGCGGTGTTCCGGACCATCCCGAGCAAGATCCTGACGCTCGA
GGACCTGAACTGCCCGAAGGTGTTCGCCGAGCTGTCGCTCAAGCCGCGCGGCATGGTGCTGGTGACCGGGCCGACCGGCT
CGGGCAAGAGCACCACGCTGGCGGCGATGGTCAACCACCGCAACGAGAACGAATACGGTCACATCCTGACGGTCGAAGAC
CCGATCGAGTTCGTGCACGAGTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGGCGCAGACGCTGTCGTTCTCGAA
CGCGCTGCGCTCGGCGCTGCGCGAGGATCCGGACGCGATCCTGGTGGGTGAGCTGCGCGATCTCGAGACCATCCGCCTGG
CGCTGACCGCCGCCGAAACCGGCCACCTGGTGTTCGGCACGCTGCACACCTCGAGCGCGGCCAAGACGATCGACCGCATG
GTCGACGTGTTCCCCGCGGCCGAGAAGGAGATGGTGCGGGCGATGCTGTCGGAGTCGCTGGTGGCGGTGATCTCGCAGTC
CCTGCTCAAGACCCGCGACGGCAGCGGCCGGGTGGCGGCGCACGAGATCATGCTGGGCACCGCCGCCATCCGCAACCTGA
TCCGCGAGAACAAGGTGGCGCAGATGTACTCGATCATCCAGACCGGCCAGGCGCAGGGCATGCAGACGCTCGACCAGTGC
CTGGCCGATCTGGTGCGGCGCGGCCAGGTCGCGGCGTCCGAGGCGCGCACGATGGCGCGCATGCCCGAGAACTTCCCGGG
TTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
74.493 |
99.424 |
0.741 |
| pilT | Acinetobacter nosocomialis M2 |
74.203 |
99.424 |
0.738 |
| pilT | Acinetobacter baumannii D1279779 |
74.203 |
99.424 |
0.738 |
| pilT | Acinetobacter baumannii strain A118 |
74.203 |
99.424 |
0.738 |
| pilT | Pseudomonas stutzeri DSM 10701 |
73.623 |
99.424 |
0.732 |
| pilT | Acinetobacter baylyi ADP1 |
71.594 |
99.424 |
0.712 |
| pilT | Legionella pneumophila strain Lp02 |
70.501 |
97.695 |
0.689 |
| pilT | Legionella pneumophila strain ERS1305867 |
70.501 |
97.695 |
0.689 |
| pilT | Neisseria meningitidis 8013 |
67.826 |
99.424 |
0.674 |
| pilT | Neisseria gonorrhoeae MS11 |
67.536 |
99.424 |
0.671 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.359 |
97.118 |
0.654 |
| pilT | Vibrio cholerae strain A1552 |
67.359 |
97.118 |
0.654 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.435 |
99.424 |
0.501 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.687 |
96.542 |
0.412 |
| pilU | Vibrio cholerae strain A1552 |
41.791 |
96.542 |
0.403 |
| pilU | Acinetobacter baylyi ADP1 |
39.884 |
99.712 |
0.398 |