Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   C7T95_RS06390 Genome accession   NZ_CP028730
Coordinates   1493260..1494297 (+) Length   345 a.a.
NCBI ID   WP_006082517.1    Uniprot ID   A0AA50Q7P7
Organism   Shewanella baltica strain 128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488260..1499297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7T95_RS06360 rdgB 1489273..1489890 (-) 618 WP_011847370.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  C7T95_RS06365 - 1490030..1490464 (-) 435 WP_006082522.1 DUF4426 domain-containing protein -
  C7T95_RS06370 yggU 1490596..1490895 (-) 300 WP_012587167.1 DUF167 family protein YggU -
  C7T95_RS06375 - 1490895..1491443 (-) 549 WP_107946890.1 YggT family protein -
  C7T95_RS06380 proC 1491492..1492310 (-) 819 WP_006082519.1 pyrroline-5-carboxylate reductase -
  C7T95_RS06385 - 1492526..1493224 (-) 699 WP_107946891.1 YggS family pyridoxal phosphate-dependent enzyme -
  C7T95_RS06390 pilT 1493260..1494297 (+) 1038 WP_006082517.1 type IV pilus twitching motility protein PilT Machinery gene
  C7T95_RS06395 pilU 1494307..1495419 (+) 1113 WP_028761282.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  C7T95_RS06400 - 1495607..1496146 (+) 540 WP_037392614.1 glutathione peroxidase -
  C7T95_RS06405 hemH 1496179..1497192 (+) 1014 WP_107946892.1 ferrochelatase -
  C7T95_RS06410 ruvX 1497278..1497703 (-) 426 WP_006082513.1 Holliday junction resolvase RuvX -
  C7T95_RS06415 - 1497733..1498296 (-) 564 WP_006082512.1 YqgE/AlgH family protein -
  C7T95_RS06420 yciH 1498363..1498692 (-) 330 WP_107946893.1 stress response translation initiation inhibitor YciH -
  C7T95_RS06425 - 1498871..1499188 (-) 318 WP_107946894.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38297.94 Da        Isoelectric Point: 6.9095

>NTDB_id=286820 C7T95_RS06390 WP_006082517.1 1493260..1494297(+) (pilT) [Shewanella baltica strain 128]
MEITELLAFSVKHKASDLHLSAGISPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAAAVFRTIPSDILSLEQLGAPEIFKKIASFPRGLVLVTGPTGSGKSTTLAAMVDYVNENRHDHILTIED
PIEFVHQNKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAGEKDMVRTMLSESLQAVISQTLIKKVGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLEQCL
QNLVNRGLITREDAMAKSSNKQATF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=286820 C7T95_RS06390 WP_006082517.1 1493260..1494297(+) (pilT) [Shewanella baltica strain 128]
ATGGAAATCACTGAGTTATTGGCATTTAGTGTAAAACACAAAGCCTCGGATCTACACCTTTCTGCAGGGATATCTCCCAT
GATCCGTGTCGACGGTGAAGTGAGAAAGATTAACCTGCCCGCGCTCGATCACCAAGGCGTACACAGCCTAGTGTACGACA
TAATGAATGATAAGCAGCGCAAGGACTACGAAGAACATTTAGAAATCGATTTCTCGTTCGAAGTCCCTAATCTTGCACGC
TTTCGTGTTAACGCATTCAATCAATCCCGTGGTGCAGCGGCTGTGTTTCGTACCATTCCAAGTGACATTTTGTCACTTGA
GCAATTGGGTGCGCCGGAAATTTTTAAAAAAATTGCCAGTTTCCCTCGCGGATTGGTGCTAGTGACTGGACCTACGGGGT
CGGGTAAGAGTACCACACTTGCCGCTATGGTGGATTACGTGAATGAAAATCGACATGATCATATCTTAACCATTGAAGAT
CCTATCGAATTCGTTCACCAAAATAAGCAATGTTTGATTAACCAACGTGAAGTTCATCGCCATACCCACAGCTTTAATGC
GGCGCTTAGAAGCGCACTACGTGAAGACCCAGACGTGATTTTAGTCGGTGAGATGCGTGACCTTGAGACCATCCGTTTGG
CGATGACCGCCGCTGAAACAGGCCACTTAGTGTTTGGTACCTTGCATACTACTTCTGCCGCGAAAACGATTGACCGTGTG
GTCGACGTATTCCCCGCCGGTGAAAAAGACATGGTGCGCACTATGTTGTCGGAATCGCTGCAAGCGGTTATTTCGCAAAC
CCTGATTAAAAAGGTTGGTGGAGGCCGTGTCGCCGCCCATGAAATCATGATGGGCACTCCCGCTATCCGTAACCTTATTC
GTGAAGACAAAGTGGCGCAGATGTATTCGGCGATTCAAACTGGTATGGCCCACGGAATGCAGACCTTAGAGCAATGTTTA
CAGAATTTAGTCAATCGCGGTCTTATCACCCGTGAAGATGCAATGGCGAAGAGTTCGAATAAACAAGCGACATTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.409

99.13

0.797
  pilT Acinetobacter baumannii D1279779

80.409

99.13

0.797
  pilT Acinetobacter baumannii strain A118

80.409

99.13

0.797
  pilT Acinetobacter baylyi ADP1

77.843

99.42

0.774
  pilT Pseudomonas aeruginosa PAK

78.698

97.971

0.771
  pilT Pseudomonas stutzeri DSM 10701

77.485

99.13

0.768
  pilT Legionella pneumophila strain Lp02

75.073

98.841

0.742
  pilT Legionella pneumophila strain ERS1305867

75.073

98.841

0.742
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

73.294

97.681

0.716
  pilT Vibrio cholerae strain A1552

73.294

97.681

0.716
  pilT Neisseria meningitidis 8013

69.767

99.71

0.696
  pilT Neisseria gonorrhoeae MS11

69.477

99.71

0.693
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.558

98.261

0.487
  pilU Pseudomonas stutzeri DSM 10701

41.983

99.42

0.417
  pilU Vibrio cholerae strain A1552

41.399

99.42

0.412
  pilU Acinetobacter baylyi ADP1

39.763

97.681

0.388

Multiple sequence alignment