Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   C7T95_RS06395 Genome accession   NZ_CP028730
Coordinates   1494307..1495419 (+) Length   370 a.a.
NCBI ID   WP_028761282.1    Uniprot ID   -
Organism   Shewanella baltica strain 128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1489307..1500419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7T95_RS06365 - 1490030..1490464 (-) 435 WP_006082522.1 DUF4426 domain-containing protein -
  C7T95_RS06370 yggU 1490596..1490895 (-) 300 WP_012587167.1 DUF167 family protein YggU -
  C7T95_RS06375 - 1490895..1491443 (-) 549 WP_107946890.1 YggT family protein -
  C7T95_RS06380 proC 1491492..1492310 (-) 819 WP_006082519.1 pyrroline-5-carboxylate reductase -
  C7T95_RS06385 - 1492526..1493224 (-) 699 WP_107946891.1 YggS family pyridoxal phosphate-dependent enzyme -
  C7T95_RS06390 pilT 1493260..1494297 (+) 1038 WP_006082517.1 type IV pilus twitching motility protein PilT Machinery gene
  C7T95_RS06395 pilU 1494307..1495419 (+) 1113 WP_028761282.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  C7T95_RS06400 - 1495607..1496146 (+) 540 WP_037392614.1 glutathione peroxidase -
  C7T95_RS06405 hemH 1496179..1497192 (+) 1014 WP_107946892.1 ferrochelatase -
  C7T95_RS06410 ruvX 1497278..1497703 (-) 426 WP_006082513.1 Holliday junction resolvase RuvX -
  C7T95_RS06415 - 1497733..1498296 (-) 564 WP_006082512.1 YqgE/AlgH family protein -
  C7T95_RS06420 yciH 1498363..1498692 (-) 330 WP_107946893.1 stress response translation initiation inhibitor YciH -
  C7T95_RS06425 - 1498871..1499188 (-) 318 WP_107946894.1 hypothetical protein -
  C7T95_RS06430 - 1499367..1499927 (+) 561 WP_006082509.1 DUF4136 domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 41029.16 Da        Isoelectric Point: 6.3720

>NTDB_id=286821 C7T95_RS06395 WP_028761282.1 1494307..1495419(+) (pilU) [Shewanella baltica strain 128]
MDVRPFLKVIVERKASDLFITAGFPPSAKIDGELRPLAESAFTPAQSLDFVESLMTEAQKQEFHSTRECNFAFAAKDLGR
FRVSAFWQRESPGCVMRRIETKIPDVDDLKLPPILKDLVMSKRGLIIMVGGTGTGKSTSLAALVGYRNGHARGHILTIED
PVEFVHDHRKSIITQREVGIDTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI
MHLVPESKHQQLLFDLSLNLRGIVAQQLIPKVDGTGRRAAIEVLINTPRVASLIAKNELHLLKETMAKSNEQGMQTFDQA
LLKLYVDGEISYADALHHADSPNDLRLMIKLQNKESTGSGFMEGVTLDMD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=286821 C7T95_RS06395 WP_028761282.1 1494307..1495419(+) (pilU) [Shewanella baltica strain 128]
ATGGATGTTCGTCCGTTTTTAAAAGTGATCGTTGAGCGCAAAGCCTCCGACTTGTTCATCACAGCGGGTTTTCCGCCGAG
TGCCAAGATTGACGGTGAATTGCGTCCATTGGCAGAAAGTGCGTTTACACCAGCACAATCACTGGATTTTGTTGAGTCGT
TAATGACTGAGGCCCAGAAGCAAGAGTTTCATTCCACTCGTGAGTGTAATTTCGCTTTTGCGGCAAAGGATTTAGGTCGT
TTTCGGGTGAGCGCTTTTTGGCAGCGTGAATCGCCTGGCTGTGTGATGCGCCGTATTGAGACTAAAATCCCTGATGTCGA
TGATTTAAAATTGCCGCCTATTCTAAAAGATCTGGTGATGAGCAAACGTGGCCTCATCATTATGGTAGGCGGAACGGGAA
CGGGTAAGTCAACGTCCTTGGCGGCCTTGGTGGGTTATCGCAATGGTCATGCCCGTGGGCATATTTTGACTATTGAAGAC
CCGGTTGAATTCGTTCATGACCACAGAAAAAGCATTATCACCCAGCGTGAAGTGGGCATAGATACTGAATCTTTCGATGC
GGCGCTAAAAAGCTCCCTTCGCCAAGCTCCCGATGTGATCTTGATTGGTGAAATACGTACCCAAGAGACGATGGAGTTTG
CGCTGTCATTTGCTGAAACGGGTCACCTTTGTATGGCAACCTTGCATGCCAACAACGCCAACCAAGCGTTAGACCGGATT
ATGCATCTCGTGCCTGAGAGTAAGCATCAACAGTTATTGTTCGATTTATCATTGAATTTACGCGGTATTGTGGCGCAACA
ATTGATCCCTAAAGTTGATGGCACAGGGCGTCGCGCCGCGATTGAAGTATTGATCAACACCCCAAGGGTGGCGAGTTTAA
TTGCGAAGAACGAGCTGCATTTGCTCAAAGAAACCATGGCCAAATCGAATGAGCAGGGCATGCAGACGTTCGATCAAGCC
TTGCTCAAACTTTATGTCGATGGCGAGATTAGTTACGCCGATGCGCTGCACCATGCTGATTCACCGAACGATTTACGTTT
GATGATTAAATTGCAGAATAAAGAATCCACGGGCTCAGGCTTTATGGAAGGTGTCACCTTAGACATGGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

59.946

100

0.603
  pilU Vibrio cholerae strain A1552

58.919

100

0.589
  pilU Acinetobacter baylyi ADP1

61.08

95.135

0.581
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.556

97.297

0.395
  pilT Vibrio cholerae strain A1552

42.424

89.189

0.378
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

42.424

89.189

0.378
  pilT Acinetobacter baumannii D1279779

39.181

92.432

0.362
  pilT Acinetobacter baumannii strain A118

39.181

92.432

0.362
  pilT Acinetobacter nosocomialis M2

39.181

92.432

0.362
  pilT Legionella pneumophila strain Lp02

40.483

89.459

0.362
  pilT Legionella pneumophila strain ERS1305867

40.483

89.459

0.362

Multiple sequence alignment