Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   SK637_RS00065 Genome accession   NZ_CP028415
Coordinates   14368..14847 (+) Length   159 a.a.
NCBI ID   WP_033688066.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 9368..19847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS00050 (SK637_00011) tilS 10449..11726 (+) 1278 WP_033689629.1 tRNA lysidine(34) synthetase TilS -
  SK637_RS00055 (SK637_00012) hpt 11731..12273 (+) 543 WP_033689631.1 hypoxanthine phosphoribosyltransferase -
  SK637_RS00060 (SK637_00013) ftsH 12289..14247 (+) 1959 WP_033689632.1 ATP-dependent zinc metalloprotease FtsH -
  SK637_RS00065 (SK637_00014) comX/sigX/comX2/sigX2 14368..14847 (+) 480 WP_033688066.1 hypothetical protein Regulator

Sequence


Protein


Download         Length: 159 a.a.        Molecular weight: 20101.89 Da        Isoelectric Point: 9.1161

>NTDB_id=284668 SK637_RS00065 WP_033688066.1 14368..14847(+) (comX/sigX/comX2/sigX2) [Streptococcus mitis strain SK637]
MFKELYKEVQGIVYKSRKEYYLHLWELSDWDQEGMICLHELISREEELVEDLPRLRKYFKTKFRNRILDHIRKQESQKRR
YDKEPYEEVGEISHRISEGGLWIDDYYLFHETLRDYRNKQSKEKQEELERVLRHERFRGRQRVLRDLRIVFKEFDIRTR

Nucleotide


Download         Length: 480 bp        

>NTDB_id=284668 SK637_RS00065 WP_033688066.1 14368..14847(+) (comX/sigX/comX2/sigX2) [Streptococcus mitis strain SK637]
ATGTTTAAAGAATTGTATAAAGAAGTCCAGGGAATTGTATATAAGAGTAGAAAGGAATATTACTTGCATTTATGGGAGCT
ATCGGATTGGGACCAAGAGGGGATGATTTGCTTGCATGAATTGATTAGTAGAGAAGAAGAGCTAGTAGAAGATCTTCCAC
GCTTACGTAAATATTTCAAAACTAAATTCCGTAATCGCATTTTAGACCATATCCGTAAACAAGAAAGCCAGAAGCGTAGA
TATGATAAAGAACCTTATGAAGAAGTAGGTGAGATCAGTCATCGTATCAGTGAGGGAGGTCTCTGGATAGATGATTATTA
TCTCTTTCATGAGACACTAAGAGATTATAGAAACAAACAAAGTAAAGAGAAACAAGAAGAGTTAGAACGCGTCTTAAGAC
ATGAACGCTTCCGAGGGCGTCAAAGAGTATTAAGAGACTTACGTATTGTGTTTAAGGAGTTTGATATCCGTACTCGGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

94.34

100

0.943

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

94.937

99.371

0.943

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

93.082

100

0.931

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

92.405

99.371

0.918

  comX/comX1 Streptococcus pneumoniae Rx1

91.139

99.371

0.906

  comX/comX2 Streptococcus pneumoniae D39

91.139

99.371

0.906

  comX/comX1 Streptococcus pneumoniae D39

91.139

99.371

0.906

  comX/comX1 Streptococcus pneumoniae R6

91.139

99.371

0.906

  comX/comX2 Streptococcus pneumoniae R6

91.139

99.371

0.906

  comX/comX2 Streptococcus pneumoniae Rx1

91.139

99.371

0.906

  comX/comX2 Streptococcus pneumoniae TIGR4

90.506

99.371

0.899

  comX/comX1 Streptococcus pneumoniae TIGR4

90.506

99.371

0.899

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

50

98.113

0.491

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

50

98.113

0.491

  comX/sigX Streptococcus mutans UA159

46.405

96.226

0.447

  comX/sigX Streptococcus suis D9

45.752

96.226

0.44

  comX/sigX Streptococcus suis isolate S10

45.752

96.226

0.44

  comX/sigX Streptococcus suis P1/7

45.752

96.226

0.44

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.282

93.711

0.396

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.282

93.711

0.396

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.282

93.711

0.396

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.282

93.711

0.396

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

41.447

95.597

0.396

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

41.447

95.597

0.396

  comX Streptococcus salivarius SK126

38.71

97.484

0.377

  comX Streptococcus sobrinus strain NIDR 6715-7

38.961

96.855

0.377

  comX/sigX Streptococcus salivarius strain HSISS4

38.065

97.484

0.371

  comX Streptococcus thermophilus LMG 18311

38.065

97.484

0.371

  comX Streptococcus thermophilus LMD-9

38.065

97.484

0.371


Multiple sequence alignment