Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   C6570_RS01815 Genome accession   NZ_CP027666
Coordinates   399512..400555 (+) Length   347 a.a.
NCBI ID   WP_106701524.1    Uniprot ID   -
Organism   Ottowia oryzae strain KADR8-3     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394512..405555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6570_RS01785 (C6570_01785) - 395653..396300 (+) 648 WP_106701511.1 TetR/AcrR family transcriptional regulator -
  C6570_RS01790 (C6570_01790) purU 396344..397192 (+) 849 WP_106701513.1 formyltetrahydrofolate deformylase -
  C6570_RS01795 (C6570_01795) - 397404..398000 (+) 597 WP_106701515.1 sigma-70 family RNA polymerase sigma factor -
  C6570_RS01800 (C6570_01800) - 398034..398402 (+) 369 WP_106701517.1 DUF5668 domain-containing protein -
  C6570_RS01805 (C6570_01805) - 398449..398670 (+) 222 WP_106701520.1 hypothetical protein -
  C6570_RS01810 (C6570_01810) - 398758..399453 (-) 696 WP_106701522.1 YggS family pyridoxal phosphate-dependent enzyme -
  C6570_RS01815 (C6570_01815) pilT 399512..400555 (+) 1044 WP_106701524.1 type IV pilus twitching motility protein PilT Machinery gene
  C6570_RS01820 (C6570_01820) pilU 400655..401791 (+) 1137 WP_106701526.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  C6570_RS01825 (C6570_01825) - 401909..402826 (+) 918 WP_106704460.1 NAD(P)-dependent oxidoreductase -
  C6570_RS01830 (C6570_01830) - 403124..403906 (-) 783 WP_106701528.1 BON domain-containing protein -
  C6570_RS01835 (C6570_01835) - 403903..404502 (-) 600 WP_106701530.1 SIS domain-containing protein -
  C6570_RS01840 (C6570_01840) - 404613..404996 (-) 384 WP_106701532.1 YraN family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38238.02 Da        Isoelectric Point: 6.8357

>NTDB_id=278803 C6570_RS01815 WP_106701524.1 399512..400555(+) (pilT) [Ottowia oryzae strain KADR8-3]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRLNVDPLDHKQVFAMLYDIMNDTQRKVYEENLEVDFSFEIEGLAR
FRVNAFNQNRGAAGVLRTIPSKILTLEQLNAPKIFGDLALKPRGLVLVTGPTGSGKSTTLAAMVNHLNETEYGHVLTVED
PIEFVHESKKCLVNQREVGPMTHSFANALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMVRAMLSESLQAVVSQTLCKTKDGQGRVAAHEIMLGTPAIRNLIREAKVAQMYSAIQTGNSMGMQTLDQN
LTEMVRRNVISPAEARGKAKIPENFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=278803 C6570_RS01815 WP_106701524.1 399512..400555(+) (pilT) [Ottowia oryzae strain KADR8-3]
GTGGATATCACGCAACTGCTGGCGTTCAGCGTCAAGAACAAAGCATCCGACCTGCACCTTTCGGCCGGCCTGCCCCCCAT
GATTCGTGTGCACGGCGACGTGCGGCGCCTGAACGTGGATCCACTGGACCACAAGCAGGTGTTCGCGATGCTGTACGACA
TCATGAACGACACCCAGCGCAAGGTGTATGAGGAAAACCTGGAGGTCGACTTCTCCTTCGAGATCGAGGGCCTGGCGCGG
TTTCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGCGGGCGTGCTGCGGACGATTCCCAGCAAGATCCTCACGCTGGA
GCAGCTGAACGCGCCCAAGATCTTCGGCGATCTGGCCCTCAAGCCGCGTGGCCTGGTGCTGGTGACCGGCCCCACGGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTCAACCACCTGAACGAAACCGAATACGGCCACGTGCTGACGGTGGAAGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGTGCCTGGTGAACCAGCGCGAAGTGGGCCCCATGACCCACAGCTTTGCGAA
CGCGCTGCGCTCTGCCCTGCGGGAAGACCCAGACGCCATTCTGGTGGGCGAGATGCGTGACCTGGAAACCATTCGCCTGG
CCATGACCGCGGCCGAAACCGGCCACTTGGTGTTCGGTACGCTGCACACCTCGTCGGCCGCCAAGACGATCGACCGGATC
ATCGACGTGTTTCCCGCGGAAGAAAAAGAGATGGTGCGGGCCATGCTGTCGGAATCGCTGCAGGCGGTGGTTTCGCAAAC
GCTGTGCAAGACCAAGGACGGCCAGGGCCGCGTGGCCGCGCACGAGATCATGCTGGGCACCCCCGCCATCCGCAACCTGA
TCCGCGAGGCCAAGGTGGCGCAGATGTATTCCGCCATCCAGACCGGCAACAGCATGGGCATGCAGACGCTGGACCAGAAT
CTGACGGAGATGGTCCGCCGCAACGTCATCAGCCCGGCCGAGGCCAGGGGCAAGGCGAAGATCCCGGAAAACTTCCCCGG
CTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

76.232

99.424

0.758
  pilT Acinetobacter nosocomialis M2

75.362

99.424

0.749
  pilT Acinetobacter baumannii D1279779

75.362

99.424

0.749
  pilT Acinetobacter baumannii strain A118

75.362

99.424

0.749
  pilT Pseudomonas stutzeri DSM 10701

74.783

99.424

0.744
  pilT Acinetobacter baylyi ADP1

73.043

99.424

0.726
  pilT Legionella pneumophila strain Lp02

72.861

97.695

0.712
  pilT Legionella pneumophila strain ERS1305867

72.861

97.695

0.712
  pilT Neisseria meningitidis 8013

66.957

99.424

0.666
  pilT Neisseria gonorrhoeae MS11

66.667

99.424

0.663
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

66.862

98.271

0.657
  pilT Vibrio cholerae strain A1552

66.862

98.271

0.657
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.304

99.424

0.51
  pilU Pseudomonas stutzeri DSM 10701

42.09

96.542

0.406
  pilU Vibrio cholerae strain A1552

42.09

96.542

0.406
  pilU Acinetobacter baylyi ADP1

40.173

99.712

0.401

Multiple sequence alignment