Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   C2U40_RS18390 Genome accession   NZ_CP026217
Coordinates   3970551..3971585 (+) Length   344 a.a.
NCBI ID   WP_011707389.1    Uniprot ID   A0A081UZ58
Organism   Aeromonas sp. ASNIH4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3965551..3976585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U40_RS18360 (C2U40_18365) - 3967238..3967549 (+) 312 WP_181014760.1 hypothetical protein -
  C2U40_RS18365 (C2U40_18370) - 3967598..3968017 (-) 420 WP_103827460.1 DUF4426 domain-containing protein -
  C2U40_RS18370 (C2U40_18375) yggU 3968036..3968335 (-) 300 WP_011707385.1 DUF167 family protein YggU -
  C2U40_RS18375 (C2U40_18380) - 3968335..3968886 (-) 552 WP_016351969.1 YggT family protein -
  C2U40_RS18380 (C2U40_18385) proC 3968927..3969751 (-) 825 WP_103827459.1 pyrroline-5-carboxylate reductase -
  C2U40_RS18385 (C2U40_18390) - 3969810..3970511 (-) 702 WP_103827458.1 YggS family pyridoxal phosphate-dependent enzyme -
  C2U40_RS18390 (C2U40_18395) pilT 3970551..3971585 (+) 1035 WP_011707389.1 type IVa pilus ATPase TapT Machinery gene
  C2U40_RS18395 (C2U40_18400) pilU 3971614..3972723 (+) 1110 WP_065475661.1 type IVa pilus ATPase TapU Machinery gene
  C2U40_RS18400 (C2U40_18405) yaaA 3972755..3973528 (+) 774 WP_103827457.1 peroxide stress protein YaaA -
  C2U40_RS18405 (C2U40_18410) srmB 3973705..3974928 (-) 1224 WP_016351974.1 ATP-dependent RNA helicase SrmB -
  C2U40_RS18410 (C2U40_18415) - 3975057..3975767 (+) 711 WP_103827456.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38287.06 Da        Isoelectric Point: 6.7439

>NTDB_id=267866 C2U40_RS18390 WP_011707389.1 3970551..3971585(+) (pilT) [Aeromonas sp. ASNIH4]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEYPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVAALDAKAKAVDPNTI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=267866 C2U40_RS18390 WP_011707389.1 3970551..3971585(+) (pilT) [Aeromonas sp. ASNIH4]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAACATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGCGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACACCGGGAAGTGCACGCCCTCATCTACGACA
TCATGAACGACCACCAGCGCAAGGAACTGGAAGAGAACTTCGAGGTCGACTTCTCGTTCGAGGTGCCAAACCTGGCTCGC
TTCCGGGTCAACGCCTTCCAGCAGGCGCGCGGCTCCGGCGCGGTATTTCGGACCATCCCCAGCACGGTGCTGAGCCTCGA
AGATCTGGACGCGCCGGAGATCTTTCGCAAGATTGCCGAATACCCGCGCGGCCTGGTGCTGGTGACCGGCCCGACCGGCT
CGGGTAAATCCACCACCCTGGCGGCCATGGTCAACTACATCAACGAGAACTTTCATCACCACATCCTCACCATCGAGGAC
CCCATCGAATTCGTGCACGAGAACAAGCGCTGTCTGGTGAACCAGCGGGAAGTACACCGCGATACCAAGAGCTTCAGCAA
CGCCCTGCGTTCTGCGCTGCGGGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGCGATCTGGAAACCATTCGCCTCG
CCATGACCGCGGCCGAGACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGGATC
ATCGACGTCTTCCCCGGTGCGGAAAAAGACATGGTGCGCTCCATGCTCTCCGAGTCGCTGCGGGCGGTCATCTCCCAGAC
CCTGCTCAAGCGCATCGGTGGCGGCCGGGTGGCGGCCCATGAGATCATGATGGGTATTCCCGCCGTGCGTAACCTCATCC
GGGAAGACAAGATCGCCCAGCTCTACTCGGTGATCCAAACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTGAGCCGCGGCGTAGTGGCGGCGCTGGATGCCAAGGCCAAGGCGGTCGATCCCAACACCATCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081UZ58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.326

100

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.833

99.128

0.762
  pilT Pseudomonas aeruginosa PAK

75.953

99.128

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

76.558

97.965

0.75
  pilT Vibrio cholerae strain A1552

76.558

97.965

0.75
  pilT Legionella pneumophila strain Lp02

72.647

98.837

0.718
  pilT Legionella pneumophila strain ERS1305867

72.647

98.837

0.718
  pilT Neisseria meningitidis 8013

70.796

98.547

0.698
  pilT Neisseria gonorrhoeae MS11

70.501

98.547

0.695
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407

Multiple sequence alignment