Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | SYNC_RS00110 | Genome accession | NC_008319 |
| Coordinates | 25515..26588 (-) | Length | 357 a.a. |
| NCBI ID | WP_041426203.1 | Uniprot ID | - |
| Organism | Synechococcus sp. CC9311 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 20515..31588
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYNC_RS00100 (sync_0018) | - | 20744..24058 (-) | 3315 | WP_041426202.1 | hypothetical protein | - |
| SYNC_RS00105 (sync_0019) | - | 24218..25498 (-) | 1281 | WP_011618010.1 | type II secretion system F family protein | - |
| SYNC_RS00110 (sync_0020) | pilT | 25515..26588 (-) | 1074 | WP_041426203.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| SYNC_RS00115 (sync_0021) | pilB/pilB1 | 26600..28372 (-) | 1773 | WP_237699236.1 | GspE/PulE family protein | Machinery gene |
| SYNC_RS00120 (sync_0022) | grpE | 28452..29180 (+) | 729 | WP_041426204.1 | nucleotide exchange factor GrpE | - |
| SYNC_RS00125 (sync_0023) | dnaJ | 29223..30353 (+) | 1131 | WP_041426205.1 | molecular chaperone DnaJ | - |
| SYNC_RS00130 (sync_0024) | - | 30357..30599 (+) | 243 | WP_011618015.1 | sulfurtransferase TusA family protein | - |
| SYNC_RS00135 (sync_0025) | rsgA | 30586..31500 (+) | 915 | WP_011618016.1 | ribosome small subunit-dependent GTPase A | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 39229.68 Da Isoelectric Point: 5.4429
>NTDB_id=26249 SYNC_RS00110 WP_041426203.1 25515..26588(-) (pilT) [Synechococcus sp. CC9311]
MELMIEDLMEQLVNGGGSDLHIASGQPPYGRFSGELRPMQEEPLSEEGCNRLIFSMLNNSQRKTLEQTWELDCAYGLKGV
ARFRVNVYRQKGSYAACLRALGSKIPSIQLLNLPPVVVETSKRPRGLVLVTGPTGSGKTTTLAALLDHINHTRAEHILTI
EDPIEFVYTSDLSLVHQRQLNEDTRSFANALRAALREDPDVILVGEMRDLETIQLAISAAETGHLVFGTLHTSSAAQTVD
RMVDVFPPSQQTQIRVQLSGSLTAVFSQTLCRRQNPAPGQFGRVMAQEIMINTPAIANLIREGKTAQLYSQIQTGGELGM
QTLERALANLIDQGEISLDEGQSKASKPAELERLLNN
MELMIEDLMEQLVNGGGSDLHIASGQPPYGRFSGELRPMQEEPLSEEGCNRLIFSMLNNSQRKTLEQTWELDCAYGLKGV
ARFRVNVYRQKGSYAACLRALGSKIPSIQLLNLPPVVVETSKRPRGLVLVTGPTGSGKTTTLAALLDHINHTRAEHILTI
EDPIEFVYTSDLSLVHQRQLNEDTRSFANALRAALREDPDVILVGEMRDLETIQLAISAAETGHLVFGTLHTSSAAQTVD
RMVDVFPPSQQTQIRVQLSGSLTAVFSQTLCRRQNPAPGQFGRVMAQEIMINTPAIANLIREGKTAQLYSQIQTGGELGM
QTLERALANLIDQGEISLDEGQSKASKPAELERLLNN
Nucleotide
Download Length: 1074 bp
>NTDB_id=26249 SYNC_RS00110 WP_041426203.1 25515..26588(-) (pilT) [Synechococcus sp. CC9311]
ATGGAACTAATGATCGAAGACTTGATGGAACAGCTGGTGAACGGAGGCGGAAGCGACCTCCACATCGCCAGCGGACAGCC
GCCTTACGGCCGATTCAGTGGCGAACTGCGGCCGATGCAGGAGGAGCCGCTCAGTGAAGAAGGCTGCAACCGCCTGATCT
TTTCCATGCTCAATAACAGCCAACGCAAAACACTCGAACAAACGTGGGAGCTGGATTGTGCCTATGGCCTAAAAGGGGTC
GCACGTTTTCGCGTGAATGTGTACCGGCAGAAAGGCAGCTATGCCGCCTGCTTACGTGCTCTTGGGAGCAAAATCCCCAG
CATTCAGTTGTTGAATCTGCCTCCAGTCGTGGTGGAAACCAGCAAACGCCCCCGGGGTCTTGTTCTGGTCACGGGTCCTA
CTGGCTCCGGCAAAACCACAACACTCGCAGCGCTTCTCGATCACATCAACCACACGCGGGCTGAGCACATCCTCACCATC
GAAGACCCGATCGAATTCGTTTACACCAGTGATCTCAGCTTGGTGCATCAACGCCAACTCAACGAAGACACGCGCAGTTT
TGCCAACGCTCTGCGCGCTGCTCTGAGAGAAGACCCAGACGTGATTTTGGTGGGTGAAATGCGTGATCTCGAAACGATTC
AACTGGCGATCAGTGCTGCAGAGACAGGGCATTTGGTGTTTGGAACCTTGCATACCAGTTCTGCAGCTCAGACGGTTGAT
CGGATGGTGGATGTGTTTCCACCGAGCCAGCAAACCCAGATCCGCGTGCAACTCTCAGGAAGCCTGACTGCGGTGTTCTC
TCAAACGCTCTGCCGACGCCAAAATCCTGCACCTGGGCAATTCGGTCGCGTTATGGCTCAAGAAATCATGATCAACACGC
CAGCCATCGCCAATTTGATCCGCGAAGGCAAAACAGCTCAGCTGTATTCCCAAATTCAAACCGGCGGCGAGCTCGGCATG
CAAACCCTGGAAAGAGCCCTTGCCAATCTGATTGATCAGGGTGAAATCAGCCTTGATGAAGGACAAAGCAAAGCCAGCAA
ACCCGCGGAACTGGAACGCCTGTTGAACAACTGA
ATGGAACTAATGATCGAAGACTTGATGGAACAGCTGGTGAACGGAGGCGGAAGCGACCTCCACATCGCCAGCGGACAGCC
GCCTTACGGCCGATTCAGTGGCGAACTGCGGCCGATGCAGGAGGAGCCGCTCAGTGAAGAAGGCTGCAACCGCCTGATCT
TTTCCATGCTCAATAACAGCCAACGCAAAACACTCGAACAAACGTGGGAGCTGGATTGTGCCTATGGCCTAAAAGGGGTC
GCACGTTTTCGCGTGAATGTGTACCGGCAGAAAGGCAGCTATGCCGCCTGCTTACGTGCTCTTGGGAGCAAAATCCCCAG
CATTCAGTTGTTGAATCTGCCTCCAGTCGTGGTGGAAACCAGCAAACGCCCCCGGGGTCTTGTTCTGGTCACGGGTCCTA
CTGGCTCCGGCAAAACCACAACACTCGCAGCGCTTCTCGATCACATCAACCACACGCGGGCTGAGCACATCCTCACCATC
GAAGACCCGATCGAATTCGTTTACACCAGTGATCTCAGCTTGGTGCATCAACGCCAACTCAACGAAGACACGCGCAGTTT
TGCCAACGCTCTGCGCGCTGCTCTGAGAGAAGACCCAGACGTGATTTTGGTGGGTGAAATGCGTGATCTCGAAACGATTC
AACTGGCGATCAGTGCTGCAGAGACAGGGCATTTGGTGTTTGGAACCTTGCATACCAGTTCTGCAGCTCAGACGGTTGAT
CGGATGGTGGATGTGTTTCCACCGAGCCAGCAAACCCAGATCCGCGTGCAACTCTCAGGAAGCCTGACTGCGGTGTTCTC
TCAAACGCTCTGCCGACGCCAAAATCCTGCACCTGGGCAATTCGGTCGCGTTATGGCTCAAGAAATCATGATCAACACGC
CAGCCATCGCCAATTTGATCCGCGAAGGCAAAACAGCTCAGCTGTATTCCCAAATTCAAACCGGCGGCGAGCTCGGCATG
CAAACCCTGGAAAGAGCCCTTGCCAATCTGATTGATCAGGGTGAAATCAGCCTTGATGAAGGACAAAGCAAAGCCAGCAA
ACCCGCGGAACTGGAACGCCTGTTGAACAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
53.488 |
96.359 |
0.515 |
| pilT | Pseudomonas aeruginosa PAK |
53.488 |
96.359 |
0.515 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.858 |
98.88 |
0.493 |
| pilT | Acinetobacter baumannii strain A118 |
50.872 |
96.359 |
0.49 |
| pilT | Acinetobacter nosocomialis M2 |
50.872 |
96.359 |
0.49 |
| pilT | Acinetobacter baumannii D1279779 |
50.872 |
96.359 |
0.49 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.252 |
93.277 |
0.487 |
| pilT | Legionella pneumophila strain Lp02 |
52.252 |
93.277 |
0.487 |
| pilT | Acinetobacter baylyi ADP1 |
50.291 |
96.359 |
0.485 |
| pilT | Vibrio cholerae strain A1552 |
50.882 |
95.238 |
0.485 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.882 |
95.238 |
0.485 |
| pilT | Neisseria meningitidis 8013 |
50.146 |
96.078 |
0.482 |
| pilT | Neisseria gonorrhoeae MS11 |
49.854 |
96.078 |
0.479 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.746 |
98.319 |
0.381 |
| pilU | Vibrio cholerae strain A1552 |
37.644 |
97.479 |
0.367 |
| pilU | Acinetobacter baylyi ADP1 |
37.356 |
97.479 |
0.364 |