Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SYNC_RS00115 Genome accession   NC_008319
Coordinates   26600..28372 (-) Length   590 a.a.
NCBI ID   WP_237699236.1    Uniprot ID   -
Organism   Synechococcus sp. CC9311     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 21600..33372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNC_RS00105 (sync_0019) - 24218..25498 (-) 1281 WP_011618010.1 type II secretion system F family protein -
  SYNC_RS00110 (sync_0020) pilT 25515..26588 (-) 1074 WP_041426203.1 type IV pilus twitching motility protein PilT Machinery gene
  SYNC_RS00115 (sync_0021) pilB/pilB1 26600..28372 (-) 1773 WP_237699236.1 GspE/PulE family protein Machinery gene
  SYNC_RS00120 (sync_0022) grpE 28452..29180 (+) 729 WP_041426204.1 nucleotide exchange factor GrpE -
  SYNC_RS00125 (sync_0023) dnaJ 29223..30353 (+) 1131 WP_041426205.1 molecular chaperone DnaJ -
  SYNC_RS00130 (sync_0024) - 30357..30599 (+) 243 WP_011618015.1 sulfurtransferase TusA family protein -
  SYNC_RS00135 (sync_0025) rsgA 30586..31500 (+) 915 WP_011618016.1 ribosome small subunit-dependent GTPase A -
  SYNC_RS00140 (sync_0026) - 31475..31816 (-) 342 WP_011618017.1 YbaB/EbfC family nucleoid-associated protein -
  SYNC_RS00145 (sync_0027) murB 31841..32779 (-) 939 WP_011618018.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64275.30 Da        Isoelectric Point: 5.3112

>NTDB_id=26250 SYNC_RS00115 WP_237699236.1 26600..28372(-) (pilB/pilB1) [Synechococcus sp. CC9311]
MSADSTRMPLPPALPAKLISEAELAAGEALLHSGQVLDLETWKQLQALPIHLTDDGLMVAIASSSDRNSREQLKQVLKSH
GYITKLVLANGADLKRILDPQEFNSDSNISQTSISETAKSLLDGFDTEGILSADPDEAEIQSNSASSLDINSSITGASPV
VTLVDRILIKALDMNASDIHVEPQQSGLQIRLRKDGVLTNLAQPLPIKLIPAITSRFKIMADLDIAERRQAQDGRIRRQY
KGRTVDFRVNSLPSRYGEKICLRLLDSQSTQLGLDKLISNPNTLELVRTLGSKPFGMILVTGPTGSGKSTTLYSLLAERN
EPGINISTVEDPIEYTLPGITQCQVNREKGFDFSTALRAFMRQDPDVLLVGETRDQETAKTAIEAALTGHLVLTTLHCND
APSAIARLDEMGVEPFMVSASLLGIVSQRLLRRVCSECRIPYHPDSRELGRFGLMTSDEGNITFFKAKHHEGPETPCPTC
QGTGYKGRIGVYEVLRMNEALAASVAKGATTDLVRQLALEAGMKTLLGYSLDLVREGHTTLEEVDRMVLTDAGLESEQRA
RALSTVTCRGCGGGLQEGWLECPYCLTPRQ

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=26250 SYNC_RS00115 WP_237699236.1 26600..28372(-) (pilB/pilB1) [Synechococcus sp. CC9311]
ATGAGCGCCGACTCCACCCGAATGCCGCTACCGCCTGCTCTGCCGGCAAAGCTGATTTCAGAGGCAGAGCTCGCCGCTGG
AGAAGCGCTCCTTCATTCCGGGCAAGTTTTAGACCTTGAAACCTGGAAGCAACTTCAGGCGCTCCCCATCCACCTCACCG
ACGACGGCCTCATGGTGGCCATCGCGAGCAGCAGCGACCGAAACAGCCGTGAACAGCTCAAGCAGGTTTTAAAAAGCCAT
GGCTACATCACCAAACTTGTATTGGCCAATGGAGCAGATCTAAAACGGATTCTTGATCCACAAGAATTCAACTCAGATTC
AAATATCAGCCAAACATCAATTAGCGAGACAGCGAAATCACTTCTCGATGGATTTGACACTGAAGGAATCTTAAGTGCCG
ATCCAGATGAAGCTGAAATTCAGAGCAATTCGGCCTCCTCGCTAGACATCAATTCATCAATAACCGGTGCATCTCCAGTT
GTCACATTGGTGGATCGTATCTTAATTAAGGCATTAGACATGAATGCCAGTGATATCCATGTAGAGCCGCAACAATCAGG
ATTGCAAATTAGGCTTAGAAAGGATGGCGTACTCACCAATTTAGCGCAACCACTCCCGATTAAACTAATCCCAGCGATTA
CCTCTCGCTTCAAGATCATGGCTGATCTTGATATCGCTGAACGGAGGCAAGCACAAGATGGTCGCATCCGTAGACAGTAC
AAAGGACGAACTGTTGACTTTCGCGTCAACAGTCTTCCCAGCCGCTATGGAGAAAAGATTTGCTTGCGGTTACTCGATAG
TCAATCAACTCAGTTAGGGCTGGACAAACTCATCTCCAATCCCAACACACTGGAGCTTGTACGAACCCTTGGTTCAAAGC
CATTCGGCATGATTCTTGTGACCGGACCAACAGGATCTGGTAAATCCACAACTCTGTATTCCTTACTAGCCGAACGCAAC
GAACCTGGGATCAATATCTCCACCGTGGAAGATCCTATTGAATACACATTGCCTGGTATTACTCAATGTCAGGTGAATCG
AGAAAAAGGATTTGACTTCAGCACTGCTCTTCGTGCCTTCATGCGCCAGGACCCAGATGTGCTGTTAGTGGGTGAGACCC
GTGATCAGGAAACAGCAAAAACTGCCATCGAAGCCGCGCTAACAGGGCACCTGGTCTTAACCACCCTTCACTGCAACGAT
GCCCCGAGCGCCATCGCCCGACTCGACGAAATGGGCGTTGAACCCTTCATGGTGAGCGCATCCTTGCTCGGCATCGTTTC
TCAACGCTTACTCAGGCGCGTATGCAGCGAGTGCCGAATCCCCTACCACCCAGATTCGCGAGAATTAGGCCGCTTTGGCC
TCATGACGAGCGATGAAGGCAATATCACCTTTTTCAAAGCCAAACACCACGAAGGGCCAGAAACGCCATGCCCCACCTGT
CAGGGCACCGGTTACAAGGGCCGTATCGGTGTGTACGAGGTGTTACGCATGAATGAAGCCCTGGCGGCATCGGTCGCCAA
GGGCGCAACCACTGATCTCGTTCGCCAATTAGCACTTGAAGCAGGAATGAAAACCTTGCTCGGCTACAGCCTTGATCTCG
TGCGAGAAGGTCACACCACTCTGGAAGAGGTGGACCGAATGGTGTTGACAGATGCGGGACTGGAATCGGAACAACGTGCC
AGGGCCCTAAGCACAGTCACTTGCCGTGGATGTGGTGGCGGACTGCAAGAAGGTTGGTTGGAATGCCCGTACTGCCTGAC
ACCCCGTCAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(167-433)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(19-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

54.657

96.441

0.527

Multiple sequence alignment