Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   SSA_RS01105 Genome accession   NC_009009
Coordinates   191573..191965 (+) Length   130 a.a.
NCBI ID   WP_033179101.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186573..196965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS01070 (SSA_0183) - 187786..188166 (+) 381 WP_011836357.1 DUF1033 family protein -
  SSA_RS01075 (SSA_0184) comGA 188296..189237 (+) 942 WP_011836358.1 competence type IV pilus ATPase ComGA Machinery gene
  SSA_RS01080 (SSA_0185) comGB 189167..190201 (+) 1035 WP_260469263.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSA_RS01085 (SSA_0186) comGC 190201..190518 (+) 318 WP_011836360.1 competence type IV pilus major pilin ComGC Machinery gene
  SSA_RS01090 (SSA_0187) comGD 190478..190912 (+) 435 WP_033179099.1 competence type IV pilus minor pilin ComGD Machinery gene
  SSA_RS01095 (SSA_0188) comGE/cglE 190878..191171 (+) 294 WP_033179100.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSA_RS01100 (SSA_0189) comGF/cglF 191155..191583 (+) 429 WP_011836363.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSA_RS01105 (SSA_0190) comGG/cglG 191573..191965 (+) 393 WP_033179101.1 competence type IV pilus minor pilin ComGG Machinery gene
  SSA_RS01110 (SSA_0191) comGH 192047..193012 (+) 966 WP_002910847.1 class I SAM-dependent methyltransferase Machinery gene
  SSA_RS01115 (SSA_0192) - 193049..194242 (+) 1194 WP_002911070.1 acetate kinase -
  SSA_RS01120 (SSA_0193) - 194386..195135 (+) 750 WP_033179102.1 CPBP family intramembrane glutamic endopeptidase -
  SSA_RS01125 (SSA_0195) - 195253..195891 (+) 639 WP_011836366.1 type II CAAX prenyl endopeptidase Rce1 family protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14727.81 Da        Isoelectric Point: 9.7462

>NTDB_id=26252 SSA_RS01105 WP_033179101.1 191573..191965(+) (comGG/cglG) [Streptococcus sanguinis SK36]
MWNKKVKAGILLYALLMAAVFSLLLQFYLNRQVSSQRLQLFNRERTEAYAMAVLTKATAKDDSGEMEFEQGKAAYRKEGK
ELEISSRLSSGHSYSFTFVISKKDEDKAKEDKKATEKKEKAVSDEAGKSD

Nucleotide


Download         Length: 393 bp        

>NTDB_id=26252 SSA_RS01105 WP_033179101.1 191573..191965(+) (comGG/cglG) [Streptococcus sanguinis SK36]
GTGTGGAATAAGAAAGTTAAGGCGGGTATTTTACTGTATGCGCTATTGATGGCTGCTGTCTTTAGCCTGCTCCTGCAGTT
TTATCTCAACCGTCAAGTCAGCAGTCAGCGTTTGCAGCTTTTCAACAGGGAAAGGACGGAAGCCTATGCAATGGCAGTTC
TGACAAAAGCTACAGCCAAGGATGATAGCGGTGAGATGGAGTTTGAGCAAGGCAAGGCGGCCTACCGTAAGGAAGGGAAG
GAACTGGAAATCAGCAGTCGGCTCAGCAGCGGTCATTCCTATTCTTTTACTTTTGTCATTTCTAAGAAGGATGAGGATAA
AGCTAAGGAAGACAAGAAAGCAACTGAGAAAAAGGAGAAAGCGGTTTCGGACGAAGCTGGTAAGTCGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

47.475

76.154

0.362
  comGG/cglG Streptococcus pneumoniae Rx1

47

76.923

0.362
  comGG/cglG Streptococcus pneumoniae R6

47

76.923

0.362
  comGG/cglG Streptococcus pneumoniae TIGR4

47

76.923

0.362
  comGG/cglG Streptococcus pneumoniae D39

47

76.923

0.362
  comGG Streptococcus mutans UA159

43.119

83.846

0.362
  comGG Streptococcus mutans UA140

43.119

83.846

0.362

Multiple sequence alignment