Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PATL_RS19040 Genome accession   NC_008228
Coordinates   4478304..4479347 (-) Length   347 a.a.
NCBI ID   WP_006990998.1    Uniprot ID   K6YXG7
Organism   Paraglaciecola sp. T6c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4473304..4484347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PATL_RS19020 (Patl_3713) dsbC 4474995..4475723 (-) 729 WP_041714085.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
  PATL_RS19025 (Patl_3714) xerD 4475869..4476774 (-) 906 WP_011576435.1 site-specific tyrosine recombinase XerD -
  PATL_RS19030 (Patl_3715) - 4476764..4477072 (-) 309 WP_041714088.1 DUF2007 domain-containing protein -
  PATL_RS19035 (Patl_3716) pilU 4477159..4478271 (-) 1113 WP_011576437.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PATL_RS19040 (Patl_3717) pilT 4478304..4479347 (-) 1044 WP_006990998.1 type IV pilus twitching motility protein PilT Machinery gene
  PATL_RS19045 (Patl_3718) - 4479376..4480059 (+) 684 WP_011576438.1 YggS family pyridoxal phosphate-dependent enzyme -
  PATL_RS19050 (Patl_3719) proC 4480196..4481017 (+) 822 WP_011576439.1 pyrroline-5-carboxylate reductase -
  PATL_RS19055 (Patl_3720) - 4481043..4481585 (+) 543 WP_011576440.1 YggT family protein -
  PATL_RS19060 (Patl_3721) - 4481566..4482015 (+) 450 WP_041714091.1 DUF4426 domain-containing protein -
  PATL_RS19065 (Patl_3722) - 4482102..4483409 (+) 1308 WP_011576442.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38613.39 Da        Isoelectric Point: 6.5665

>NTDB_id=26054 PATL_RS19040 WP_006990998.1 4478304..4479347(-) (pilT) [Paraglaciecola sp. T6c]
MDITELLAFSVKNNASDLHLSAGLPPIIRVDGEMRRLNVPALDHKQVHALIYEIMNDNQRKEYEENLETDFSFEVKDLSR
FRVNAFVQNRGAAAVLRTIPSKILSLDDLGAPQIFKDIINQPTGIVLVTGATGSGKSTTLAAMVDHINRHKREHILTIED
PIEFVHENKLCVMNQREVHRDTHSFSNALRSALREDPDVILVGELRDLETIRLAISAAETGHLVFGTLHTNSAPKTIDRL
IDVFPAEEKSMVRSMLSESLRAVISQTLLKKVGGGRVAAHEIMLGIPAIRNLIREDKVPQMYSVMQTSQAHGMQTMDQCL
QKMVAQGLITNEDAASLSIDKKPGMNF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=26054 PATL_RS19040 WP_006990998.1 4478304..4479347(-) (pilT) [Paraglaciecola sp. T6c]
TTGGATATTACCGAACTTTTAGCCTTTAGTGTCAAAAATAACGCATCAGATTTACACCTGTCAGCAGGCCTACCGCCAAT
TATTCGCGTTGATGGAGAGATGCGTCGGTTAAATGTTCCCGCCTTAGATCACAAGCAAGTTCATGCCCTGATATACGAAA
TCATGAACGATAACCAACGCAAAGAGTATGAAGAAAATTTAGAGACCGATTTCTCATTTGAAGTGAAAGACTTATCGCGT
TTTCGGGTTAATGCGTTCGTGCAAAATCGAGGTGCAGCTGCTGTACTGAGAACCATTCCAAGCAAAATTTTAAGCTTAGA
TGATTTAGGTGCACCGCAGATATTCAAGGACATTATTAATCAGCCTACTGGGATTGTATTGGTCACTGGAGCGACTGGTT
CGGGTAAAAGTACCACGCTTGCGGCCATGGTTGATCATATAAACCGGCACAAGCGGGAGCATATCCTGACCATTGAGGAT
CCCATCGAGTTCGTGCATGAAAATAAGCTGTGCGTGATGAATCAACGTGAAGTGCATCGCGATACACACAGTTTCAGTAA
TGCGCTGCGCTCGGCTTTGCGTGAAGATCCAGATGTGATCCTTGTTGGCGAGCTGCGCGACCTTGAGACTATACGGTTAG
CGATATCAGCTGCTGAAACAGGTCATTTAGTGTTTGGTACGCTGCATACCAACTCAGCACCAAAAACCATAGACAGACTG
ATTGACGTGTTCCCTGCAGAAGAAAAGTCCATGGTGCGCTCTATGTTGTCAGAATCATTACGGGCGGTTATTTCACAAAC
CTTATTGAAAAAAGTAGGCGGTGGACGTGTTGCCGCCCATGAAATCATGCTTGGTATACCCGCTATACGTAACCTTATTC
GTGAAGATAAAGTGCCGCAAATGTACTCTGTCATGCAAACCAGCCAAGCTCATGGCATGCAAACTATGGATCAGTGCTTA
CAAAAAATGGTCGCTCAAGGTTTGATTACCAATGAAGATGCCGCTTCACTATCGATTGATAAGAAGCCGGGCATGAATTT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K6YXG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

74.636

98.847

0.738
  pilT Acinetobacter baumannii strain A118

74.636

98.847

0.738
  pilT Acinetobacter nosocomialis M2

74.344

98.847

0.735
  pilT Pseudomonas stutzeri DSM 10701

75.749

96.254

0.729
  pilT Pseudomonas aeruginosa PAK

74.85

96.254

0.72
  pilT Acinetobacter baylyi ADP1

75.38

94.813

0.715
  pilT Legionella pneumophila strain Lp02

70.381

98.271

0.692
  pilT Legionella pneumophila strain ERS1305867

70.381

98.271

0.692
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.131

96.83

0.689
  pilT Vibrio cholerae strain A1552

71.131

96.83

0.689
  pilT Neisseria meningitidis 8013

65.97

96.542

0.637
  pilT Neisseria gonorrhoeae MS11

65.672

96.542

0.634
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.187

98.847

0.516
  pilU Acinetobacter baylyi ADP1

42.262

96.83

0.409
  pilU Vibrio cholerae strain A1552

42.388

96.542

0.409
  pilU Pseudomonas stutzeri DSM 10701

41.791

96.542

0.403

Multiple sequence alignment