Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   PATL_RS19035 Genome accession   NC_008228
Coordinates   4477159..4478271 (-) Length   370 a.a.
NCBI ID   WP_011576437.1    Uniprot ID   A0A9J9BDT6
Organism   Paraglaciecola sp. T6c     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4472159..4483271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PATL_RS19010 (Patl_3711) - 4472815..4473096 (-) 282 WP_006991004.1 hypothetical protein -
  PATL_RS19015 (Patl_3712) recJ 4473196..4474914 (-) 1719 WP_011576433.1 single-stranded-DNA-specific exonuclease RecJ -
  PATL_RS19020 (Patl_3713) dsbC 4474995..4475723 (-) 729 WP_041714085.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
  PATL_RS19025 (Patl_3714) xerD 4475869..4476774 (-) 906 WP_011576435.1 site-specific tyrosine recombinase XerD -
  PATL_RS19030 (Patl_3715) - 4476764..4477072 (-) 309 WP_041714088.1 DUF2007 domain-containing protein -
  PATL_RS19035 (Patl_3716) pilU 4477159..4478271 (-) 1113 WP_011576437.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PATL_RS19040 (Patl_3717) pilT 4478304..4479347 (-) 1044 WP_006990998.1 type IV pilus twitching motility protein PilT Machinery gene
  PATL_RS19045 (Patl_3718) - 4479376..4480059 (+) 684 WP_011576438.1 YggS family pyridoxal phosphate-dependent enzyme -
  PATL_RS19050 (Patl_3719) proC 4480196..4481017 (+) 822 WP_011576439.1 pyrroline-5-carboxylate reductase -
  PATL_RS19055 (Patl_3720) - 4481043..4481585 (+) 543 WP_011576440.1 YggT family protein -
  PATL_RS19060 (Patl_3721) - 4481566..4482015 (+) 450 WP_041714091.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40802.80 Da        Isoelectric Point: 5.2444

>NTDB_id=26053 PATL_RS19035 WP_011576437.1 4477159..4478271(-) (pilU) [Paraglaciecola sp. T6c]
MDLTPYLQEMTDLNASDLFITVGMPISAKINGQLTPIGGSKLDEDGAWGLVQDAMTDTQKEQFVQTKECNFAIAREGIGR
FRCSAFWQRDMPGMVIRRIVTDIPKAADLGLPAVLKDIIMSKRGLVLFVGATGTGKSTSLAALIGHRNHHSRGHILTIED
PIEFVHEHQSCVVTQREVGIDTQSFDDALKSSLRQAPDVILIGEIRSMETMEYAMSFADTGHLCVATLHANNANQAIERI
MHLAPPEQHEKLRFDLSLNMRAVIAQQLVPTVDGKGRVAAIEILLNSPLVTDLIQRNEIGGLKEAMRKGKEMGMQSFDMA
LYTLYQEQKISLEQAIHHADSPNDLRLMIKLDSDQGDALGSLSNVSIDMD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=26053 PATL_RS19035 WP_011576437.1 4477159..4478271(-) (pilU) [Paraglaciecola sp. T6c]
ATGGACTTAACTCCTTACTTGCAAGAAATGACTGATTTAAATGCGTCTGATTTGTTTATAACGGTAGGCATGCCAATCAG
CGCAAAAATTAACGGTCAACTTACGCCAATAGGCGGCAGTAAATTGGATGAAGACGGTGCTTGGGGCTTAGTGCAAGATG
CTATGACCGATACGCAAAAAGAGCAATTTGTGCAAACCAAAGAGTGCAATTTTGCGATTGCAAGAGAGGGGATCGGGCGT
TTTCGTTGCAGCGCATTTTGGCAACGTGATATGCCGGGCATGGTTATTAGGCGAATAGTGACCGACATTCCTAAAGCAGC
TGATTTAGGACTGCCTGCTGTGCTCAAAGATATTATTATGAGTAAACGCGGTTTGGTGTTGTTTGTTGGTGCCACTGGTA
CCGGTAAGTCTACGTCCTTGGCTGCCTTAATTGGCCATCGCAATCATCATTCCCGAGGGCATATTCTCACCATTGAAGAT
CCAATTGAATTTGTTCACGAACATCAAAGCTGTGTTGTGACCCAAAGAGAAGTGGGTATTGATACCCAATCATTTGATGA
CGCATTAAAAAGCTCTTTGCGCCAAGCCCCAGATGTTATCTTGATCGGTGAAATCCGCTCCATGGAAACCATGGAATATG
CAATGTCATTCGCCGATACCGGGCATTTATGTGTGGCTACGCTACATGCTAATAACGCCAATCAGGCCATTGAGCGTATT
ATGCATTTGGCGCCACCAGAGCAGCATGAAAAACTGCGTTTTGATTTGAGCTTGAATATGCGTGCGGTCATAGCACAGCA
ATTGGTACCAACGGTCGATGGCAAAGGACGCGTGGCCGCCATTGAAATCTTGCTAAATTCCCCTCTGGTGACTGACTTGA
TCCAGCGAAACGAAATTGGCGGCTTAAAAGAGGCCATGCGTAAAGGCAAAGAAATGGGCATGCAAAGTTTTGATATGGCA
CTTTATACCTTGTACCAAGAACAAAAAATCAGCTTGGAACAAGCAATACACCATGCCGATTCACCAAATGACCTGCGCCT
GATGATTAAACTTGATTCTGATCAAGGTGACGCATTAGGTTCGTTGTCAAATGTATCTATCGATATGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

58.108

100

0.581
  pilU Acinetobacter baylyi ADP1

58.311

99.189

0.578
  pilU Pseudomonas stutzeri DSM 10701

57.418

98.378

0.565
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.322

98.108

0.405
  pilT Pseudomonas stutzeri DSM 10701

39.42

93.243

0.368
  pilT Pseudomonas aeruginosa PAK

39.42

93.243

0.368
  pilT Legionella pneumophila strain Lp02

40.299

90.541

0.365
  pilT Legionella pneumophila strain ERS1305867

40.299

90.541

0.365
  pilT Acinetobacter nosocomialis M2

38.841

93.243

0.362
  pilT Acinetobacter baumannii D1279779

38.841

93.243

0.362
  pilT Acinetobacter baumannii strain A118

38.841

93.243

0.362

Multiple sequence alignment