Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | HCH_RS28650 | Genome accession | NC_007645 |
| Coordinates | 6491754..6492788 (-) | Length | 344 a.a. |
| NCBI ID | WP_011400052.1 | Uniprot ID | A0AAE5XN00 |
| Organism | Hahella chejuensis KCTC 2396 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6486754..6497788
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCH_RS28635 (HCH_06349) | - | 6487286..6487564 (-) | 279 | WP_011400049.1 | DUF2782 domain-containing protein | - |
| HCH_RS28640 (HCH_06350) | polA | 6487752..6490487 (+) | 2736 | WP_011400050.1 | DNA polymerase I | - |
| HCH_RS28645 (HCH_06351) | pilU | 6490564..6491691 (-) | 1128 | WP_011400051.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| HCH_RS28650 (HCH_06352) | pilT | 6491754..6492788 (-) | 1035 | WP_011400052.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| HCH_RS28655 (HCH_06353) | - | 6492946..6493629 (+) | 684 | WP_011400053.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| HCH_RS28660 (HCH_06354) | proC | 6493735..6494565 (+) | 831 | WP_011400054.1 | pyrroline-5-carboxylate reductase | - |
| HCH_RS28665 (HCH_06356) | - | 6494641..6495180 (+) | 540 | WP_011400055.1 | YggT family protein | - |
| HCH_RS28670 (HCH_06357) | - | 6495173..6495481 (+) | 309 | WP_011400056.1 | DUF167 family protein | - |
| HCH_RS28675 (HCH_06358) | - | 6495667..6497625 (+) | 1959 | WP_011400057.1 | dynamin family protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38015.82 Da Isoelectric Point: 6.3477
>NTDB_id=25215 HCH_RS28650 WP_011400052.1 6491754..6492788(-) (pilT) [Hahella chejuensis KCTC 2396]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMEHKEVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGQVFKDIALKPRGLCLVTGPTGSGKSTTLAAMIDFINDTRYDHILTIED
PIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKAMVRSMLSESLQAVVSQTLLKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSSIQTGAALGMQTLDQCL
HNLISKGLISREAAREKAKMPENF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMEHKEVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGQVFKDIALKPRGLCLVTGPTGSGKSTTLAAMIDFINDTRYDHILTIED
PIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKAMVRSMLSESLQAVVSQTLLKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSSIQTGAALGMQTLDQCL
HNLISKGLISREAAREKAKMPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=25215 HCH_RS28650 WP_011400052.1 6491754..6492788(-) (pilT) [Hahella chejuensis KCTC 2396]
ATGGACATTACCGAGTTGCTTGCGTTTTCTGCTAAGCAGGGCGCTTCCGACTTACACCTATCTGCCGGGTTGCCTCCCAT
GATACGCGTCGACGGGGATGTCAGGCGAATCAACCTGCCCGCGATGGAGCATAAAGAAGTACACGCGCTGATTTACGATA
TTATGAACGATAAACAGCGCAAGGATTTCGAAGAATTTCTGGAAACGGATTTCTCGTTTGAAGTTCCCGGGGTCGCCCGT
TTCCGGGTTAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTATTCCGGACCATCCCCTCCAAAGTACTGACGATGGA
AGACTTGGGGATGGGGCAGGTGTTCAAGGATATCGCTCTGAAGCCTCGCGGACTCTGTCTGGTCACGGGACCAACCGGCT
CCGGTAAGAGTACAACGCTGGCGGCGATGATCGACTTTATCAACGATACCCGTTACGACCATATCCTCACTATCGAGGAC
CCTATCGAGTTCGTGCATGAAAGTAAGAAGTGTCTGGTGAACCAGCGTGAAGTGCACCGTGACACCTTAGGGTTCAGTGA
AGCGCTGCGTTCAGCCCTGCGGGAAGACCCGGACATTATCCTGGTTGGTGAGATGCGGGACTTGGAAACCATCCGTCTGG
CGCTGACCGCCGCAGAAACCGGACACTTGGTGTTCGGCACCCTGCACACTACCTCCGCCGCGAAAACCATTGACCGGGTG
GTCGACGTGTTTCCTGCGGAAGAAAAAGCCATGGTAAGATCCATGCTCTCCGAATCGTTACAGGCGGTCGTCTCGCAGAC
TCTTTTGAAGAAGGTCGGCGGCGGTCGTGTGGCGGCCCATGAAATCATGATAGGCACGCCGGCGATTCGTAACCTGATAC
GCGAAGACAAAGTCGCCCAGATGTACTCGTCTATTCAGACTGGCGCCGCGTTGGGTATGCAGACCCTTGACCAGTGCCTG
CACAATTTGATTTCTAAAGGGCTTATCAGCCGCGAAGCCGCGCGCGAAAAAGCCAAGATGCCGGAGAATTTCTGA
ATGGACATTACCGAGTTGCTTGCGTTTTCTGCTAAGCAGGGCGCTTCCGACTTACACCTATCTGCCGGGTTGCCTCCCAT
GATACGCGTCGACGGGGATGTCAGGCGAATCAACCTGCCCGCGATGGAGCATAAAGAAGTACACGCGCTGATTTACGATA
TTATGAACGATAAACAGCGCAAGGATTTCGAAGAATTTCTGGAAACGGATTTCTCGTTTGAAGTTCCCGGGGTCGCCCGT
TTCCGGGTTAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTATTCCGGACCATCCCCTCCAAAGTACTGACGATGGA
AGACTTGGGGATGGGGCAGGTGTTCAAGGATATCGCTCTGAAGCCTCGCGGACTCTGTCTGGTCACGGGACCAACCGGCT
CCGGTAAGAGTACAACGCTGGCGGCGATGATCGACTTTATCAACGATACCCGTTACGACCATATCCTCACTATCGAGGAC
CCTATCGAGTTCGTGCATGAAAGTAAGAAGTGTCTGGTGAACCAGCGTGAAGTGCACCGTGACACCTTAGGGTTCAGTGA
AGCGCTGCGTTCAGCCCTGCGGGAAGACCCGGACATTATCCTGGTTGGTGAGATGCGGGACTTGGAAACCATCCGTCTGG
CGCTGACCGCCGCAGAAACCGGACACTTGGTGTTCGGCACCCTGCACACTACCTCCGCCGCGAAAACCATTGACCGGGTG
GTCGACGTGTTTCCTGCGGAAGAAAAAGCCATGGTAAGATCCATGCTCTCCGAATCGTTACAGGCGGTCGTCTCGCAGAC
TCTTTTGAAGAAGGTCGGCGGCGGTCGTGTGGCGGCCCATGAAATCATGATAGGCACGCCGGCGATTCGTAACCTGATAC
GCGAAGACAAAGTCGCCCAGATGTACTCGTCTATTCAGACTGGCGCCGCGTTGGGTATGCAGACCCTTGACCAGTGCCTG
CACAATTTGATTTCTAAAGGGCTTATCAGCCGCGAAGCCGCGCGCGAAAAAGCCAAGATGCCGGAGAATTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
91.57 |
100 |
0.916 |
| pilT | Pseudomonas aeruginosa PAK |
90.988 |
100 |
0.91 |
| pilT | Acinetobacter nosocomialis M2 |
84.884 |
100 |
0.849 |
| pilT | Acinetobacter baumannii D1279779 |
84.593 |
100 |
0.846 |
| pilT | Acinetobacter baumannii strain A118 |
84.593 |
100 |
0.846 |
| pilT | Acinetobacter baylyi ADP1 |
82.849 |
100 |
0.828 |
| pilT | Legionella pneumophila strain Lp02 |
76.331 |
98.256 |
0.75 |
| pilT | Legionella pneumophila strain ERS1305867 |
76.331 |
98.256 |
0.75 |
| pilT | Neisseria gonorrhoeae MS11 |
68.116 |
100 |
0.683 |
| pilT | Neisseria meningitidis 8013 |
68.116 |
100 |
0.683 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.941 |
98.837 |
0.672 |
| pilT | Vibrio cholerae strain A1552 |
67.941 |
98.837 |
0.672 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.333 |
100 |
0.535 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.687 |
97.384 |
0.416 |
| pilU | Vibrio cholerae strain A1552 |
40.708 |
98.547 |
0.401 |
| pilU | Acinetobacter baylyi ADP1 |
39.595 |
100 |
0.398 |