Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PBPR_RS15985 Genome accession   NC_006370
Coordinates   3578747..3579784 (-) Length   345 a.a.
NCBI ID   WP_011219712.1    Uniprot ID   Q6LMM0
Organism   Photobacterium profundum SS9     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3573747..3584784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBPR_RS15955 (PBPRA3137) rsmE 3573880..3574611 (+) 732 WP_011219707.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PBPR_RS15960 (PBPRA3138) gshB 3574641..3575588 (+) 948 WP_011219708.1 glutathione synthase -
  PBPR_RS15965 (PBPRA3139) - 3576186..3576749 (+) 564 WP_041394524.1 YqgE/AlgH family protein -
  PBPR_RS15970 (PBPRA3140) ruvX 3576746..3577174 (+) 429 WP_011219710.1 Holliday junction resolvase RuvX -
  PBPR_RS31135 - 3577321..3577500 (+) 180 WP_172635960.1 hypothetical protein -
  PBPR_RS15980 (PBPRA3141) pilU 3577569..3578672 (-) 1104 WP_081470364.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PBPR_RS15985 (PBPRA3142) pilT 3578747..3579784 (-) 1038 WP_011219712.1 type IV pilus twitching motility protein PilT Machinery gene
  PBPR_RS15990 (PBPRA3143) - 3579807..3580508 (+) 702 WP_041394526.1 YggS family pyridoxal phosphate-dependent enzyme -
  PBPR_RS15995 (PBPRA3144) proC 3580558..3581376 (+) 819 WP_011219714.1 pyrroline-5-carboxylate reductase -
  PBPR_RS16000 (PBPRA3145) - 3581386..3581941 (+) 556 Protein_3105 YggT family protein -
  PBPR_RS16005 (PBPRA3146) yggU 3581938..3582231 (+) 294 WP_041394527.1 DUF167 family protein YggU -
  PBPR_RS16010 (PBPRA3147) - 3582322..3582750 (+) 429 WP_011219717.1 DUF4426 domain-containing protein -
  PBPR_RS16015 (PBPRA3148) - 3583120..3583713 (+) 594 WP_011219718.1 XTP/dITP diphosphatase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37965.34 Da        Isoelectric Point: 6.4412

>NTDB_id=23889 PBPR_RS15985 WP_011219712.1 3578747..3579784(-) (pilT) [Photobacterium profundum SS9]
MDITELLDFSVKHNASDLHLSAGVPPMIRVDGDVRKLSLPALDHSEVHRLVFDIMNDAQRREYEERLEVDFSFELPNVGR
FRVNAFHQSRGGAAVFRTIPVAIPTLESLNVPDIFYKIAQCQRGLVLVTGATGSGKSTTIAALVDYINENTNSHILTIED
PVEFVHTSKRCLINQREVHRDTHSFHNALRSALREDPDVIVVGELRDQETISLALTAAETGHLVLGTLHTSSAAKTVDRI
IDVFPGNDKAMVRSMLSESLRAVVSQSLLKSVNGGRVAAHEVMIATPAIRNLIRESKIAQMYSMIQTGSSMGMQTMEQSV
KMLVAQGTVESEEGRRIVNGASSIM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=23889 PBPR_RS15985 WP_011219712.1 3578747..3579784(-) (pilT) [Photobacterium profundum SS9]
ATGGATATCACAGAACTACTGGACTTTAGTGTAAAGCATAATGCGTCAGATCTGCACCTTTCTGCGGGTGTACCACCAAT
GATCCGTGTTGATGGTGATGTTAGAAAGCTCAGCCTACCAGCTTTAGACCATTCAGAAGTACACCGTTTAGTGTTCGACA
TTATGAACGATGCACAGCGCCGTGAATACGAAGAAAGGCTTGAAGTCGATTTTTCATTTGAATTACCTAATGTAGGTCGC
TTTCGTGTGAATGCGTTTCATCAATCTCGTGGTGGTGCAGCAGTATTTCGAACGATTCCTGTCGCTATTCCCACCCTTGA
ATCACTTAATGTACCCGATATTTTTTATAAAATTGCGCAATGTCAGCGTGGTTTAGTCTTGGTAACTGGGGCAACCGGTT
CAGGTAAATCCACCACAATTGCCGCTTTAGTGGATTACATTAATGAAAATACCAATAGCCATATCTTAACCATTGAAGAT
CCGGTGGAATTTGTTCATACCAGTAAGCGCTGCTTGATCAATCAGCGTGAAGTACACCGTGATACGCACAGTTTTCACAA
TGCATTACGATCTGCCTTACGTGAAGATCCCGATGTGATTGTGGTGGGGGAATTACGCGATCAAGAAACCATTAGTTTGG
CACTAACAGCAGCTGAAACAGGGCACTTAGTATTAGGTACTTTGCACACCAGTTCTGCGGCGAAAACCGTCGATCGTATT
ATCGATGTATTCCCGGGTAATGATAAGGCCATGGTACGTTCAATGCTGTCAGAGTCGTTGCGTGCTGTGGTATCTCAAAG
CCTGCTTAAAAGTGTGAATGGCGGGCGAGTGGCCGCGCATGAAGTGATGATCGCCACCCCCGCGATTAGAAATCTGATCC
GAGAAAGCAAAATCGCGCAAATGTATTCAATGATCCAAACGGGATCGTCTATGGGTATGCAAACCATGGAACAAAGCGTC
AAAATGCTGGTGGCACAAGGTACTGTTGAGTCTGAAGAAGGGCGTCGTATAGTCAATGGTGCATCATCAATCATGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LMM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

78.679

96.522

0.759
  pilT Vibrio cholerae strain A1552

78.679

96.522

0.759
  pilT Acinetobacter baumannii D1279779

71.642

97.101

0.696
  pilT Acinetobacter baumannii strain A118

71.642

97.101

0.696
  pilT Acinetobacter nosocomialis M2

71.343

97.101

0.693
  pilT Acinetobacter baylyi ADP1

68.605

99.71

0.684
  pilT Pseudomonas stutzeri DSM 10701

68.955

97.101

0.67
  pilT Pseudomonas aeruginosa PAK

68.657

97.101

0.667
  pilT Legionella pneumophila strain Lp02

68.693

95.362

0.655
  pilT Legionella pneumophila strain ERS1305867

68.693

95.362

0.655
  pilT Neisseria meningitidis 8013

65.217

100

0.652
  pilT Neisseria gonorrhoeae MS11

64.928

100

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.657

97.101

0.472
  pilU Pseudomonas stutzeri DSM 10701

41.916

96.812

0.406
  pilU Vibrio cholerae strain A1552

40

100

0.4
  pilU Acinetobacter baylyi ADP1

40.062

93.333

0.374

Multiple sequence alignment