Detailed information NTG0229107

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: CAY53_RS02820
• Genome accession: NZ_CP021255
• Coordinates: 658183..658449 (+)
• Length: 88 a.a.
• NCBI ID: WP_104935840.1
• Uniprot ID: -
• Organism: Desulfobulbus oralis strain HOT041/ORNL
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 653183..663449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAY53_RS02795 (CAY53_02800)	nadB	653203..654858 (+)	1656	WP_104935835.1	L-aspartate oxidase	-
CAY53_RS02800 (CAY53_02805)	-	654982..655896 (+)	915	WP_104935836.1	NAD(P)-dependent oxidoreductase	-
CAY53_RS02805 (CAY53_02810)	-	655954..656361 (+)	408	WP_245874856.1	transcriptional repressor	-
CAY53_RS02810 (CAY53_02815)	-	656418..656798 (+)	381	WP_104935838.1	desulfoferrodoxin	-
CAY53_RS02815 (CAY53_02820)	-	656809..658032 (+)	1224	WP_104935839.1	flavodoxin domain-containing protein	-
CAY53_RS02820 (CAY53_02825)	comE	658183..658449 (+)	267	WP_104935840.1	ComEA family DNA-binding protein	Machinery gene
CAY53_RS02825 (CAY53_02830)	-	658563..659606 (+)	1044	WP_245874857.1	zinc ABC transporter substrate-binding protein	-
CAY53_RS02830 (CAY53_02835)	-	659593..660417 (+)	825	WP_245874858.1	metal ABC transporter ATP-binding protein	-
CAY53_RS02835 (CAY53_02840)	-	660410..661264 (+)	855	WP_104935842.1	metal ABC transporter permease	-
CAY53_RS02840 (CAY53_02845)	-	661340..662047 (-)	708	WP_104935843.1	DUF4198 domain-containing protein	-

Sequence

Protein

• Length: 88 a.a.
• Molecular weight: 9649.46 Da
• Isoelectric Point: 10.3432

>NTDB_id=229107 CAY53_RS02820 WP_104935840.1 658183..658449(+) (comE) [Desulfobulbus oralis strain HOT041/ORNL]
MKKLLFTVFFLLCFATAAFAKVNINTATVQELTALPGIGQVKAEAIVKYREANGSFKSVDDLTKVKGIGPKMLDKIRDEI
SVETKAKK

Nucleotide

• Length: 267 bp

>NTDB_id=229107 CAY53_RS02820 WP_104935840.1 658183..658449(+) (comE) [Desulfobulbus oralis strain HOT041/ORNL]
ATGAAAAAATTACTGTTTACCGTGTTTTTTTTACTGTGCTTTGCAACTGCAGCCTTTGCCAAGGTAAACATCAACACCGC
AACAGTGCAGGAATTGACCGCACTCCCCGGGATTGGGCAGGTCAAGGCGGAAGCCATTGTGAAATACCGGGAAGCAAACG
GTTCTTTCAAGAGTGTGGATGATTTGACCAAGGTCAAGGGTATTGGCCCCAAAATGCTGGACAAGATCAGGGATGAAATT
TCTGTAGAGACCAAAGCCAAGAAGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (20-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Neisseria gonorrhoeae MS11	57.778	100	0.591
comE	Neisseria gonorrhoeae MS11	57.778	100	0.591
comE	Neisseria gonorrhoeae MS11	57.778	100	0.591
comE	Neisseria gonorrhoeae MS11	57.778	100	0.591
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.143	95.455	0.545
comEA	Acinetobacter baylyi ADP1	59.677	70.455	0.42
comEA	Lactococcus lactis subsp. cremoris KW2	51.429	79.545	0.409
comEA/comE1	Glaesserella parasuis strain SC1401	57.143	71.591	0.409
comEA	Bacillus subtilis subsp. subtilis str. 168	55.556	71.591	0.398
comEA	Vibrio cholerae strain A1552	69.388	55.682	0.386
comEA	Vibrio cholerae C6706	69.388	55.682	0.386
comEA	Staphylococcus aureus MW2	57.895	64.773	0.375
comEA	Staphylococcus aureus N315	57.895	64.773	0.375
comEA	Streptococcus thermophilus LMD-9	52.381	71.591	0.375
comEA	Vibrio campbellii strain DS40M4	55	68.182	0.375
comE1/comEA	Haemophilus influenzae Rd KW20	54.098	69.318	0.375
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	46.377	78.409	0.364
comEA/celA/cilE	Streptococcus mitis NCTC 12261	46.377	78.409	0.364
comEA	Vibrio parahaemolyticus RIMD 2210633	53.333	68.182	0.364