Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   B9C53_RS12940 Genome accession   NZ_CP020874
Coordinates   2704219..2704908 (+) Length   229 a.a.
NCBI ID   WP_199910472.1    Uniprot ID   -
Organism   Bacillus velezensis strain GYL4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2699219..2709908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS12915 (B9C53_12885) degS 2699503..2700666 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  B9C53_RS12920 (B9C53_12890) degU 2700743..2701432 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B9C53_RS12925 (B9C53_12895) - 2701530..2702378 (+) 849 WP_003151387.1 DegV family protein -
  B9C53_RS12930 (B9C53_12900) comFA 2702486..2703871 (+) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  B9C53_RS12935 (B9C53_12905) - 2703929..2704213 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  B9C53_RS12940 (B9C53_12910) comFC 2704219..2704908 (+) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  B9C53_RS12945 (B9C53_12915) - 2704982..2705401 (+) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  B9C53_RS12950 (B9C53_12920) flgM 2705471..2705737 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B9C53_RS12955 (B9C53_12925) - 2705752..2706234 (+) 483 WP_003151394.1 flagellar protein FlgN -
  B9C53_RS12960 (B9C53_12930) flgK 2706250..2707767 (+) 1518 WP_038460039.1 flagellar hook-associated protein FlgK -
  B9C53_RS12965 (B9C53_12935) flgL 2707779..2708696 (+) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  B9C53_RS12970 (B9C53_12940) - 2708787..2709356 (+) 570 WP_038460037.1 DUF6470 family protein -
  B9C53_RS12975 (B9C53_12945) fliW 2709386..2709817 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25255.87 Da        Isoelectric Point: 8.0697

>NTDB_id=226784 B9C53_RS12940 WP_199910472.1 2704219..2704908(+) (comFC) [Bacillus velezensis strain GYL4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLYQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=226784 B9C53_RS12940 WP_199910472.1 2704219..2704908(+) (comFC) [Bacillus velezensis strain GYL4]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTTTACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment