Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | BVG12_RS24370 | Genome accession | NZ_CP019038 |
| Coordinates | 4984244..4985287 (-) | Length | 347 a.a. |
| NCBI ID | WP_075794644.1 | Uniprot ID | - |
| Organism | Massilia putida strain 6NM-7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4979244..4990287
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVG12_RS24360 | - | 4979958..4982843 (-) | 2886 | WP_075794642.1 | TonB-dependent receptor | - |
| BVG12_RS24365 | pilU | 4983088..4984224 (-) | 1137 | WP_075794643.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| BVG12_RS24370 | pilT | 4984244..4985287 (-) | 1044 | WP_075794644.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| BVG12_RS24375 | - | 4985351..4986052 (+) | 702 | WP_075794645.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| BVG12_RS24380 | proC | 4986093..4986911 (+) | 819 | WP_075794646.1 | pyrroline-5-carboxylate reductase | - |
| BVG12_RS24385 | - | 4986915..4987928 (-) | 1014 | WP_075794647.1 | family 43 glycosylhydrolase | - |
| BVG12_RS24390 | - | 4988142..4989023 (+) | 882 | WP_075794648.1 | alpha/beta hydrolase | - |
| BVG12_RS24395 | - | 4989122..4990174 (+) | 1053 | WP_075794649.1 | LacI family DNA-binding transcriptional regulator | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38139.88 Da Isoelectric Point: 6.7267
>NTDB_id=212709 BVG12_RS24370 WP_075794644.1 4984244..4985287(-) (pilT) [Massilia putida strain 6NM-7]
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKQYEEMLECDFSFAIPGLAR
FRVNAYNQERGAAAVMRTIPSKILSLEELNAPKIFADLAMKPRGLVLVTGPTGSGKSTTLAAMINHLNENEYGHILTIED
PIEFVHESKKCLINQREVGPHTLSFNNALRSALREDPDAILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPAEEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMIGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQN
LTDLVRRNVISSSAARFAAKIPENFPG
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKQYEEMLECDFSFAIPGLAR
FRVNAYNQERGAAAVMRTIPSKILSLEELNAPKIFADLAMKPRGLVLVTGPTGSGKSTTLAAMINHLNENEYGHILTIED
PIEFVHESKKCLINQREVGPHTLSFNNALRSALREDPDAILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPAEEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMIGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQN
LTDLVRRNVISSSAARFAAKIPENFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=212709 BVG12_RS24370 WP_075794644.1 4984244..4985287(-) (pilT) [Massilia putida strain 6NM-7]
ATGGACATCTCTGAGCTGCTCGCTTTCTCGGTCAAGAACAAAGCCTCCGACCTGCACCTGTCGGCCGGCCTGCCGCCGAT
GATCCGCGTGCATGGCGACGTACGCCGCATCAACCTGCCGCCGCTGGAGCACAAGGACGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAGCAGTACGAAGAGATGCTGGAGTGCGACTTCTCGTTCGCGATCCCCGGCCTCGCGCGC
TTCCGCGTCAACGCGTACAACCAGGAACGCGGCGCCGCCGCCGTGATGCGGACGATTCCGTCCAAGATCCTGTCGCTGGA
AGAGCTGAACGCGCCGAAGATCTTCGCCGACCTGGCGATGAAACCGCGCGGCCTCGTGCTCGTGACGGGTCCGACCGGCT
CCGGCAAGTCGACCACGCTCGCCGCGATGATCAACCACCTGAACGAAAACGAGTACGGCCACATTCTGACGATCGAGGAC
CCGATCGAGTTCGTGCACGAATCGAAGAAGTGCCTGATCAACCAGCGCGAAGTGGGCCCGCACACGCTGTCGTTCAACAA
CGCGCTGCGCTCGGCGCTGCGCGAAGACCCGGACGCGATCCTCGTCGGCGAGCTGCGCGACCTGGAGACGATCCGCCTCG
CGCTGTCCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACGCTGCACACCTCGTCGGCCGCGAAAACCATCGACCGTATC
GTCGACGTGTTCCCGGCCGAAGAAAAGGAGATGGTGCGCGCGATGCTGTCGGAATCGCTGCAGGCCGTGATCTCGCAGAC
GCTGCTGAAAACGAAGGACGGGTCGGGCCGCGTGGCCGCGCACGAGATCATGATCGGCACGCCGGCCATCCGCAACCTGA
TCCGCGAAGCGAAGATCGCGCAGATGTATTCCGCGATCCAGACCGGCTCCAACGTCGGCATGCAGACGCTGGACCAGAAC
CTGACGGACCTCGTGCGCCGCAACGTGATCTCGTCCTCGGCCGCACGCTTCGCCGCCAAGATCCCCGAAAACTTCCCCGG
CTAA
ATGGACATCTCTGAGCTGCTCGCTTTCTCGGTCAAGAACAAAGCCTCCGACCTGCACCTGTCGGCCGGCCTGCCGCCGAT
GATCCGCGTGCATGGCGACGTACGCCGCATCAACCTGCCGCCGCTGGAGCACAAGGACGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAGCAGTACGAAGAGATGCTGGAGTGCGACTTCTCGTTCGCGATCCCCGGCCTCGCGCGC
TTCCGCGTCAACGCGTACAACCAGGAACGCGGCGCCGCCGCCGTGATGCGGACGATTCCGTCCAAGATCCTGTCGCTGGA
AGAGCTGAACGCGCCGAAGATCTTCGCCGACCTGGCGATGAAACCGCGCGGCCTCGTGCTCGTGACGGGTCCGACCGGCT
CCGGCAAGTCGACCACGCTCGCCGCGATGATCAACCACCTGAACGAAAACGAGTACGGCCACATTCTGACGATCGAGGAC
CCGATCGAGTTCGTGCACGAATCGAAGAAGTGCCTGATCAACCAGCGCGAAGTGGGCCCGCACACGCTGTCGTTCAACAA
CGCGCTGCGCTCGGCGCTGCGCGAAGACCCGGACGCGATCCTCGTCGGCGAGCTGCGCGACCTGGAGACGATCCGCCTCG
CGCTGTCCGCCGCCGAGACGGGCCACCTCGTGTTCGGCACGCTGCACACCTCGTCGGCCGCGAAAACCATCGACCGTATC
GTCGACGTGTTCCCGGCCGAAGAAAAGGAGATGGTGCGCGCGATGCTGTCGGAATCGCTGCAGGCCGTGATCTCGCAGAC
GCTGCTGAAAACGAAGGACGGGTCGGGCCGCGTGGCCGCGCACGAGATCATGATCGGCACGCCGGCCATCCGCAACCTGA
TCCGCGAAGCGAAGATCGCGCAGATGTATTCCGCGATCCAGACCGGCTCCAACGTCGGCATGCAGACGCTGGACCAGAAC
CTGACGGACCTCGTGCGCCGCAACGTGATCTCGTCCTCGGCCGCACGCTTCGCCGCCAAGATCCCCGAAAACTTCCCCGG
CTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
77.681 |
99.424 |
0.772 |
| pilT | Acinetobacter baumannii D1279779 |
77.681 |
99.424 |
0.772 |
| pilT | Acinetobacter baumannii strain A118 |
77.681 |
99.424 |
0.772 |
| pilT | Pseudomonas aeruginosa PAK |
77.391 |
99.424 |
0.769 |
| pilT | Pseudomonas stutzeri DSM 10701 |
75.362 |
99.424 |
0.749 |
| pilT | Acinetobacter baylyi ADP1 |
75.072 |
99.424 |
0.746 |
| pilT | Legionella pneumophila strain Lp02 |
75.516 |
97.695 |
0.738 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.516 |
97.695 |
0.738 |
| pilT | Neisseria gonorrhoeae MS11 |
69.855 |
99.424 |
0.695 |
| pilT | Neisseria meningitidis 8013 |
69.855 |
99.424 |
0.695 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.675 |
95.677 |
0.657 |
| pilT | Vibrio cholerae strain A1552 |
68.675 |
95.677 |
0.657 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.174 |
99.424 |
0.519 |
| pilU | Acinetobacter baylyi ADP1 |
42.486 |
99.712 |
0.424 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.298 |
97.695 |
0.403 |
| pilU | Vibrio cholerae strain A1552 |
41.298 |
97.695 |
0.403 |