Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | Ga0123461_RS04930 | Genome accession | NZ_CP018799 |
| Coordinates | 997478..998530 (-) | Length | 350 a.a. |
| NCBI ID | WP_100277312.1 | Uniprot ID | - |
| Organism | Mariprofundus aestuarium strain CP-5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 992478..1003530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ga0123461_RS04910 (Ga0123461_0991) | - | 993426..994343 (-) | 918 | WP_100277308.1 | hypothetical protein | - |
| Ga0123461_RS04915 (Ga0123461_0992) | - | 994498..995118 (+) | 621 | WP_100277309.1 | lysophospholipid acyltransferase family protein | - |
| Ga0123461_RS04920 (Ga0123461_0993) | - | 995155..996246 (-) | 1092 | WP_100277310.1 | type IV pilus twitching motility protein PilT | - |
| Ga0123461_RS04925 (Ga0123461_0994) | pilU | 996246..997400 (-) | 1155 | WP_100277311.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| Ga0123461_RS04930 (Ga0123461_0995) | pilT | 997478..998530 (-) | 1053 | WP_100277312.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| Ga0123461_RS04935 (Ga0123461_0996) | - | 998690..999763 (-) | 1074 | WP_418289087.1 | response regulator | - |
| Ga0123461_RS04940 (Ga0123461_0997) | - | 999760..1003215 (-) | 3456 | WP_100277313.1 | hybrid sensor histidine kinase/response regulator | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 38864.92 Da Isoelectric Point: 7.2892
>NTDB_id=210295 Ga0123461_RS04930 WP_100277312.1 997478..998530(-) (pilT) [Mariprofundus aestuarium strain CP-5]
MEVSELLAFTVKNKASDLHLSSGEPPMIRINGDMTRIKMPAVDRREVQSMVYDIMSDHQRKAFEEHLELDFSFALGEIAR
FRVNVFEQRRGMAAVFRVIPSEVLTLENLKCPDIFKDISMTPRGICLVTGPTGSGKSTTLAAMINHRNEMERGHILTIED
PIEFVHKSKNCLISQRELGPHTHSFENALRSALREDPDVVLVGELRDLETIRLALTAAETGHMVFGTLHTSSAPKTIDRV
IDVFPAAEKEMVRAMLSESIRAVISQTLIKTADGNSRVAAHEIMIGTPAIRNLIRENKIPQMVSVMQTSLREGMQTLDSN
LQALVNSRKITQQAALEKAANKKLFGGGAV
MEVSELLAFTVKNKASDLHLSSGEPPMIRINGDMTRIKMPAVDRREVQSMVYDIMSDHQRKAFEEHLELDFSFALGEIAR
FRVNVFEQRRGMAAVFRVIPSEVLTLENLKCPDIFKDISMTPRGICLVTGPTGSGKSTTLAAMINHRNEMERGHILTIED
PIEFVHKSKNCLISQRELGPHTHSFENALRSALREDPDVVLVGELRDLETIRLALTAAETGHMVFGTLHTSSAPKTIDRV
IDVFPAAEKEMVRAMLSESIRAVISQTLIKTADGNSRVAAHEIMIGTPAIRNLIRENKIPQMVSVMQTSLREGMQTLDSN
LQALVNSRKITQQAALEKAANKKLFGGGAV
Nucleotide
Download Length: 1053 bp
>NTDB_id=210295 Ga0123461_RS04930 WP_100277312.1 997478..998530(-) (pilT) [Mariprofundus aestuarium strain CP-5]
ATGGAAGTATCGGAACTGCTTGCTTTTACTGTAAAAAACAAGGCTTCGGATTTGCATCTCTCATCGGGTGAGCCGCCGAT
GATCCGCATCAACGGAGACATGACACGCATCAAGATGCCCGCCGTCGATCGACGTGAAGTTCAGTCCATGGTTTATGACA
TCATGAGCGATCACCAGCGTAAGGCGTTCGAAGAGCACCTGGAACTCGACTTCTCTTTTGCACTGGGAGAAATAGCCCGT
TTCCGTGTTAACGTGTTTGAACAGCGGCGTGGTATGGCTGCAGTGTTCCGCGTGATTCCGAGCGAAGTGCTGACTCTGGA
AAACCTGAAGTGCCCAGATATTTTCAAGGATATCTCCATGACCCCGCGTGGCATCTGCCTGGTCACCGGGCCAACAGGCT
CGGGCAAATCAACAACCCTTGCTGCCATGATCAACCATCGCAATGAGATGGAACGTGGCCATATCCTGACTATTGAAGAC
CCGATCGAGTTTGTGCACAAATCCAAAAACTGCCTGATTTCACAGCGCGAACTGGGGCCACACACCCACTCGTTTGAAAA
CGCCCTGCGCAGCGCACTGCGTGAGGATCCTGATGTGGTCCTAGTTGGTGAGTTGCGTGATCTGGAGACCATTCGACTTG
CCCTGACCGCTGCTGAAACCGGTCACATGGTATTCGGTACCCTGCACACCTCATCCGCCCCTAAAACGATCGACCGTGTC
ATCGATGTGTTTCCTGCCGCGGAAAAGGAGATGGTGCGTGCCATGCTTTCCGAGTCCATTCGCGCCGTTATCTCACAGAC
ACTGATTAAAACGGCCGACGGCAACAGTCGCGTCGCAGCCCATGAAATCATGATCGGTACGCCCGCCATCCGTAACCTGA
TACGCGAAAACAAGATCCCCCAGATGGTATCGGTGATGCAGACATCACTGCGCGAAGGTATGCAGACACTGGACAGCAAC
TTGCAAGCGTTGGTGAACTCAAGAAAGATCACACAGCAGGCCGCACTTGAAAAAGCGGCCAACAAAAAGCTATTCGGCGG
CGGTGCCGTATAG
ATGGAAGTATCGGAACTGCTTGCTTTTACTGTAAAAAACAAGGCTTCGGATTTGCATCTCTCATCGGGTGAGCCGCCGAT
GATCCGCATCAACGGAGACATGACACGCATCAAGATGCCCGCCGTCGATCGACGTGAAGTTCAGTCCATGGTTTATGACA
TCATGAGCGATCACCAGCGTAAGGCGTTCGAAGAGCACCTGGAACTCGACTTCTCTTTTGCACTGGGAGAAATAGCCCGT
TTCCGTGTTAACGTGTTTGAACAGCGGCGTGGTATGGCTGCAGTGTTCCGCGTGATTCCGAGCGAAGTGCTGACTCTGGA
AAACCTGAAGTGCCCAGATATTTTCAAGGATATCTCCATGACCCCGCGTGGCATCTGCCTGGTCACCGGGCCAACAGGCT
CGGGCAAATCAACAACCCTTGCTGCCATGATCAACCATCGCAATGAGATGGAACGTGGCCATATCCTGACTATTGAAGAC
CCGATCGAGTTTGTGCACAAATCCAAAAACTGCCTGATTTCACAGCGCGAACTGGGGCCACACACCCACTCGTTTGAAAA
CGCCCTGCGCAGCGCACTGCGTGAGGATCCTGATGTGGTCCTAGTTGGTGAGTTGCGTGATCTGGAGACCATTCGACTTG
CCCTGACCGCTGCTGAAACCGGTCACATGGTATTCGGTACCCTGCACACCTCATCCGCCCCTAAAACGATCGACCGTGTC
ATCGATGTGTTTCCTGCCGCGGAAAAGGAGATGGTGCGTGCCATGCTTTCCGAGTCCATTCGCGCCGTTATCTCACAGAC
ACTGATTAAAACGGCCGACGGCAACAGTCGCGTCGCAGCCCATGAAATCATGATCGGTACGCCCGCCATCCGTAACCTGA
TACGCGAAAACAAGATCCCCCAGATGGTATCGGTGATGCAGACATCACTGCGCGAAGGTATGCAGACACTGGACAGCAAC
TTGCAAGCGTTGGTGAACTCAAGAAAGATCACACAGCAGGCCGCACTTGAAAAAGCGGCCAACAAAAAGCTATTCGGCGG
CGGTGCCGTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baumannii D1279779 |
66.377 |
98.571 |
0.654 |
| pilT | Acinetobacter nosocomialis M2 |
66.377 |
98.571 |
0.654 |
| pilT | Acinetobacter baumannii strain A118 |
66.377 |
98.571 |
0.654 |
| pilT | Neisseria gonorrhoeae MS11 |
66.181 |
98 |
0.649 |
| pilT | Neisseria meningitidis 8013 |
66.181 |
98 |
0.649 |
| pilT | Pseudomonas stutzeri DSM 10701 |
65.217 |
98.571 |
0.643 |
| pilT | Pseudomonas aeruginosa PAK |
65.487 |
96.857 |
0.634 |
| pilT | Legionella pneumophila strain ERS1305867 |
62.899 |
98.571 |
0.62 |
| pilT | Legionella pneumophila strain Lp02 |
62.899 |
98.571 |
0.62 |
| pilT | Acinetobacter baylyi ADP1 |
66.769 |
92.857 |
0.62 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
62.462 |
92.857 |
0.58 |
| pilT | Vibrio cholerae strain A1552 |
62.462 |
92.857 |
0.58 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.855 |
98.571 |
0.491 |
| pilU | Acinetobacter baylyi ADP1 |
42.353 |
97.143 |
0.411 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.003 |
96.857 |
0.397 |
| pilU | Vibrio cholerae strain A1552 |
38.938 |
96.857 |
0.377 |