Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | Ga0123461_RS04925 | Genome accession | NZ_CP018799 |
| Coordinates | 996246..997400 (-) | Length | 384 a.a. |
| NCBI ID | WP_100277311.1 | Uniprot ID | A0A2K8L374 |
| Organism | Mariprofundus aestuarium strain CP-5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 991246..1002400
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ga0123461_RS04910 (Ga0123461_0991) | - | 993426..994343 (-) | 918 | WP_100277308.1 | hypothetical protein | - |
| Ga0123461_RS04915 (Ga0123461_0992) | - | 994498..995118 (+) | 621 | WP_100277309.1 | lysophospholipid acyltransferase family protein | - |
| Ga0123461_RS04920 (Ga0123461_0993) | - | 995155..996246 (-) | 1092 | WP_100277310.1 | type IV pilus twitching motility protein PilT | - |
| Ga0123461_RS04925 (Ga0123461_0994) | pilU | 996246..997400 (-) | 1155 | WP_100277311.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| Ga0123461_RS04930 (Ga0123461_0995) | pilT | 997478..998530 (-) | 1053 | WP_100277312.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| Ga0123461_RS04935 (Ga0123461_0996) | - | 998690..999763 (-) | 1074 | WP_418289087.1 | response regulator | - |
Sequence
Protein
Download Length: 384 a.a. Molecular weight: 42972.51 Da Isoelectric Point: 5.4906
>NTDB_id=210294 Ga0123461_RS04925 WP_100277311.1 996246..997400(-) (pilU) [Mariprofundus aestuarium strain CP-5]
MNRPEEQLSIKQLLMVMEKREASDLYITAGMPPSLRINGAVHPMNREPLTALQCAKLANSAMSERQRAAFAAEFEMNLAL
AFPDIGRFRVNVFRQRSQVGMVIRKVKTEVPTIDQLGLPEIFKDISISPRGLVLMVGATGCGKSTSLAAMIDWRNSNQAG
HIISIEDPIEFVHEHKKCVITQREVGTDTLEYQTALKNTLRQAPDVIMIGEIRDRETMELALEFAETGHLCMATLHANNS
NQALERIINFFPEEMHPQVCLNLALNLKSILSQRLAKTPDERRVAAIEILINTPRIADLIGKWGVAEIKEVMANGKNYGM
QTFDQHLLQLWAAGLISEDEALRQADSVNNLRLQIKMVTLEDQGDSAGDLEQLSGNMNSEEFRI
MNRPEEQLSIKQLLMVMEKREASDLYITAGMPPSLRINGAVHPMNREPLTALQCAKLANSAMSERQRAAFAAEFEMNLAL
AFPDIGRFRVNVFRQRSQVGMVIRKVKTEVPTIDQLGLPEIFKDISISPRGLVLMVGATGCGKSTSLAAMIDWRNSNQAG
HIISIEDPIEFVHEHKKCVITQREVGTDTLEYQTALKNTLRQAPDVIMIGEIRDRETMELALEFAETGHLCMATLHANNS
NQALERIINFFPEEMHPQVCLNLALNLKSILSQRLAKTPDERRVAAIEILINTPRIADLIGKWGVAEIKEVMANGKNYGM
QTFDQHLLQLWAAGLISEDEALRQADSVNNLRLQIKMVTLEDQGDSAGDLEQLSGNMNSEEFRI
Nucleotide
Download Length: 1155 bp
>NTDB_id=210294 Ga0123461_RS04925 WP_100277311.1 996246..997400(-) (pilU) [Mariprofundus aestuarium strain CP-5]
ATGAACAGACCTGAAGAACAGCTATCGATCAAGCAGCTACTGATGGTGATGGAAAAACGTGAAGCGTCTGACCTCTACAT
CACTGCAGGTATGCCCCCCTCCTTGCGTATCAACGGTGCCGTTCACCCGATGAACCGGGAACCGCTGACAGCACTGCAGT
GCGCAAAACTGGCCAACTCGGCCATGAGCGAACGCCAGCGTGCGGCCTTCGCCGCTGAATTTGAGATGAACCTAGCACTC
GCCTTTCCCGATATCGGTCGTTTCCGCGTCAATGTCTTCCGACAGCGCAGCCAAGTTGGCATGGTGATCCGCAAGGTGAA
AACAGAGGTTCCAACCATCGATCAGCTGGGCCTTCCGGAAATCTTCAAGGATATCAGCATCTCTCCACGTGGGCTGGTGC
TGATGGTGGGAGCAACCGGTTGTGGAAAGTCCACCTCACTGGCTGCCATGATCGACTGGCGCAACAGTAATCAGGCGGGA
CACATCATCTCCATCGAGGATCCGATCGAGTTTGTGCATGAGCACAAGAAGTGTGTCATCACCCAGCGTGAGGTGGGCAC
CGATACGCTTGAGTATCAGACAGCCCTGAAAAACACGCTCAGGCAGGCACCCGATGTTATTATGATTGGTGAGATTCGTG
ATCGCGAGACAATGGAGCTGGCACTCGAATTTGCCGAAACCGGCCACCTATGCATGGCAACACTGCATGCCAACAACTCC
AATCAGGCACTGGAGCGCATTATCAACTTCTTCCCGGAAGAGATGCACCCTCAGGTCTGCCTCAACCTGGCTCTGAATCT
GAAGTCGATCCTCTCCCAGCGGCTGGCAAAAACACCTGATGAGAGGCGCGTTGCAGCCATTGAGATTCTGATCAACACCC
CCCGTATTGCCGATCTGATTGGCAAATGGGGTGTTGCAGAGATCAAGGAGGTGATGGCAAACGGTAAAAATTACGGCATG
CAGACCTTCGATCAGCATCTGCTGCAGCTCTGGGCAGCGGGTCTTATCAGCGAGGATGAAGCGCTGCGCCAGGCCGACTC
GGTCAACAACCTGCGCCTGCAGATTAAAATGGTAACTCTGGAGGATCAGGGTGACAGTGCTGGTGACCTGGAACAACTCT
CCGGCAACATGAATTCAGAGGAGTTCCGCATCTGA
ATGAACAGACCTGAAGAACAGCTATCGATCAAGCAGCTACTGATGGTGATGGAAAAACGTGAAGCGTCTGACCTCTACAT
CACTGCAGGTATGCCCCCCTCCTTGCGTATCAACGGTGCCGTTCACCCGATGAACCGGGAACCGCTGACAGCACTGCAGT
GCGCAAAACTGGCCAACTCGGCCATGAGCGAACGCCAGCGTGCGGCCTTCGCCGCTGAATTTGAGATGAACCTAGCACTC
GCCTTTCCCGATATCGGTCGTTTCCGCGTCAATGTCTTCCGACAGCGCAGCCAAGTTGGCATGGTGATCCGCAAGGTGAA
AACAGAGGTTCCAACCATCGATCAGCTGGGCCTTCCGGAAATCTTCAAGGATATCAGCATCTCTCCACGTGGGCTGGTGC
TGATGGTGGGAGCAACCGGTTGTGGAAAGTCCACCTCACTGGCTGCCATGATCGACTGGCGCAACAGTAATCAGGCGGGA
CACATCATCTCCATCGAGGATCCGATCGAGTTTGTGCATGAGCACAAGAAGTGTGTCATCACCCAGCGTGAGGTGGGCAC
CGATACGCTTGAGTATCAGACAGCCCTGAAAAACACGCTCAGGCAGGCACCCGATGTTATTATGATTGGTGAGATTCGTG
ATCGCGAGACAATGGAGCTGGCACTCGAATTTGCCGAAACCGGCCACCTATGCATGGCAACACTGCATGCCAACAACTCC
AATCAGGCACTGGAGCGCATTATCAACTTCTTCCCGGAAGAGATGCACCCTCAGGTCTGCCTCAACCTGGCTCTGAATCT
GAAGTCGATCCTCTCCCAGCGGCTGGCAAAAACACCTGATGAGAGGCGCGTTGCAGCCATTGAGATTCTGATCAACACCC
CCCGTATTGCCGATCTGATTGGCAAATGGGGTGTTGCAGAGATCAAGGAGGTGATGGCAAACGGTAAAAATTACGGCATG
CAGACCTTCGATCAGCATCTGCTGCAGCTCTGGGCAGCGGGTCTTATCAGCGAGGATGAAGCGCTGCGCCAGGCCGACTC
GGTCAACAACCTGCGCCTGCAGATTAAAATGGTAACTCTGGAGGATCAGGGTGACAGTGCTGGTGACCTGGAACAACTCT
CCGGCAACATGAATTCAGAGGAGTTCCGCATCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
54.775 |
92.708 |
0.508 |
| pilU | Acinetobacter baylyi ADP1 |
53.693 |
91.667 |
0.492 |
| pilU | Vibrio cholerae strain A1552 |
50.135 |
96.615 |
0.484 |
| pilT | Pseudomonas aeruginosa PAK |
44.186 |
89.583 |
0.396 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.543 |
88.281 |
0.393 |
| pilT | Pseudomonas stutzeri DSM 10701 |
43.023 |
89.583 |
0.385 |
| pilT | Acinetobacter baumannii strain A118 |
44.012 |
86.979 |
0.383 |
| pilT | Acinetobacter baumannii D1279779 |
44.012 |
86.979 |
0.383 |
| pilT | Acinetobacter nosocomialis M2 |
43.713 |
86.979 |
0.38 |
| pilT | Acinetobacter baylyi ADP1 |
43.939 |
85.938 |
0.378 |
| pilT | Legionella pneumophila strain Lp02 |
42.515 |
86.979 |
0.37 |
| pilT | Legionella pneumophila strain ERS1305867 |
42.515 |
86.979 |
0.37 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.742 |
86.719 |
0.362 |
| pilT | Vibrio cholerae strain A1552 |
41.742 |
86.719 |
0.362 |
| pilT | Neisseria gonorrhoeae MS11 |
41.003 |
88.281 |
0.362 |
| pilT | Neisseria meningitidis 8013 |
41.003 |
88.281 |
0.362 |