Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   XF_RS06920 Genome accession   NC_002488
Coordinates   1572367..1573401 (-) Length   344 a.a.
NCBI ID   WP_004084948.1    Uniprot ID   A0A060GZY3
Organism   Xylella fastidiosa 9a5c     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567367..1578401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF_RS06905 (XF1628) - 1567888..1568697 (-) 810 WP_031336664.1 DUF481 domain-containing protein -
  XF_RS06910 (XF1630) - 1569541..1570554 (+) 1014 WP_229716473.1 helix-turn-helix transcriptional regulator -
  XF_RS06915 (XF1632) pilU 1571071..1572201 (-) 1131 WP_010894128.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  XF_RS06920 (XF1633) pilT 1572367..1573401 (-) 1035 WP_004084948.1 type IV pilus twitching motility protein PilT Machinery gene
  XF_RS14660 (XF1634) - 1573470..1573667 (-) 198 WP_010894129.1 hypothetical protein -
  XF_RS06935 (XF1637) - 1574664..1575491 (+) 828 WP_173405994.1 glycosyltransferase family 2 protein -
  XF_RS06940 (XF1638) - 1576155..1576979 (-) 825 WP_010894133.1 glycosyltransferase family 2 protein -
  XF_RS06945 - 1576976..1577755 (-) 780 WP_023906627.1 beta-ketoacyl synthase chain length factor -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38497.20 Da        Isoelectric Point: 6.8843

>NTDB_id=20588 XF_RS06920 WP_004084948.1 1572367..1573401(-) (pilT) [Xylella fastidiosa 9a5c]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=20588 XF_RS06920 WP_004084948.1 1572367..1573401(-) (pilT) [Xylella fastidiosa 9a5c]
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTCGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTACGAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCAGCTGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCGCAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAGACCCTTGACCAGCATTTA
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060GZY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

75.872

100

0.759
  pilT Pseudomonas aeruginosa PAK

74.709

100

0.747
  pilT Acinetobacter baumannii D1279779

74.419

100

0.744
  pilT Acinetobacter baylyi ADP1

74.419

100

0.744
  pilT Acinetobacter baumannii strain A118

74.419

100

0.744
  pilT Acinetobacter nosocomialis M2

74.419

100

0.744
  pilT Legionella pneumophila strain Lp02

71.221

100

0.712
  pilT Legionella pneumophila strain ERS1305867

71.221

100

0.712
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.06

97.384

0.663
  pilT Vibrio cholerae strain A1552

68.06

97.384

0.663
  pilT Neisseria gonorrhoeae MS11

62.463

99.128

0.619
  pilT Neisseria meningitidis 8013

62.17

99.128

0.616
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.986

100

0.491
  pilU Pseudomonas stutzeri DSM 10701

40.698

100

0.407
  pilU Vibrio cholerae strain A1552

39.826

100

0.398
  pilU Acinetobacter baylyi ADP1

39.595

100

0.398

Multiple sequence alignment