Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   PSJM300_06395 Genome accession   CP003725
Coordinates   1376745..1377065 (+) Length   106 a.a.
NCBI ID   AFN77353.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371745..1382065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_06380 flgJ 1372089..1373273 (+) 1185 AFN77350.1 flagellar rod assembly protein/muramidase FlgJ -
  PSJM300_06385 flgK 1373276..1375330 (+) 2055 AFN77351.1 flagellar hook-associated protein FlgK -
  PSJM300_06390 flgL 1375342..1376613 (+) 1272 AFN77352.1 flagellar hook-associated protein FlgL -
  PSJM300_06395 comE1/comEA 1376745..1377065 (+) 321 AFN77353.1 helix-hairpin-helix repeat-containing competence protein ComEA Machinery gene
  PSJM300_06400 - 1377617..1378078 (+) 462 AFN77354.1 hypothetical protein -
  PSJM300_06405 - 1378178..1378501 (+) 324 AFN77355.1 Cro/CI family transcriptional regulator -
  PSJM300_06410 - 1378519..1378878 (+) 360 AFN77356.1 hypothetical protein -
  PSJM300_06415 - 1378878..1379345 (+) 468 AFN77357.1 hypothetical protein -
  PSJM300_06420 - 1379396..1380634 (-) 1239 AFN77358.1 EAL/GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 10835.33 Da        Isoelectric Point: 6.4614

>NTDB_id=20463 PSJM300_06395 AFN77353.1 1376745..1377065(+) (comE1/comEA) [Pseudomonas stutzeri DSM 10701]
MSKAFLSAVAFALLTSVSLSGHAAATQSEPVGASPAAVIETGAINLNTADAETLTRELIGIGATKARAIVQYRDAHGPFT
SVDELLEVKGIGAATLEKNRGKLSLN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=20463 PSJM300_06395 AFN77353.1 1376745..1377065(+) (comE1/comEA) [Pseudomonas stutzeri DSM 10701]
ATGAGCAAAGCCTTTCTTTCGGCAGTTGCCTTCGCACTGCTGACCAGCGTCTCCCTCTCAGGCCATGCGGCCGCCACCCA
ATCCGAGCCGGTCGGTGCCAGCCCAGCTGCCGTAATCGAAACAGGGGCGATCAACCTCAACACTGCCGATGCTGAAACCC
TGACCCGCGAACTGATCGGTATCGGTGCGACCAAGGCCAGGGCCATCGTCCAGTATCGTGACGCGCACGGCCCGTTCACT
TCGGTCGACGAGCTGCTTGAAGTGAAGGGTATCGGTGCCGCCACCCTGGAAAAGAATCGAGGCAAGCTTAGCCTCAACTG
A

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

52.564

73.585

0.387
  comEA Legionella pneumophila str. Paris

41.414

93.396

0.387
  comEA Legionella pneumophila strain ERS1305867

41.414

93.396

0.387
  comEA/comE1 Glaesserella parasuis strain SC1401

42.105

89.623

0.377
  comEA Vibrio cholerae C6706

52

70.755

0.368
  comEA Vibrio cholerae strain A1552

52

70.755

0.368

Multiple sequence alignment