Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | Q5W_RS18645 | Genome accession | NZ_CP017311 |
| Coordinates | 3912006..3913049 (-) | Length | 347 a.a. |
| NCBI ID | WP_009519820.1 | Uniprot ID | - |
| Organism | Hydrogenophaga sp. PBC | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3907006..3918049
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q5W_RS18630 (Q5W_18630) | - | 3909042..3909806 (+) | 765 | WP_138820258.1 | DUF6065 family protein | - |
| Q5W_RS18635 (Q5W_18635) | - | 3909824..3910717 (-) | 894 | WP_009519818.1 | NAD(P)-dependent oxidoreductase | - |
| Q5W_RS18640 (Q5W_18640) | pilU | 3910844..3911980 (-) | 1137 | WP_009519819.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| Q5W_RS18645 (Q5W_18645) | pilT | 3912006..3913049 (-) | 1044 | WP_009519820.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| Q5W_RS18650 (Q5W_18650) | - | 3913091..3913819 (+) | 729 | WP_035623887.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| Q5W_RS18655 (Q5W_18655) | - | 3913800..3914348 (-) | 549 | WP_009519822.1 | DUF3617 domain-containing protein | - |
| Q5W_RS18660 (Q5W_18660) | - | 3914418..3914888 (-) | 471 | WP_009519823.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| Q5W_RS18665 (Q5W_18665) | - | 3914987..3917983 (+) | 2997 | WP_050980713.1 | L-glutamate gamma-semialdehyde dehydrogenase | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38128.80 Da Isoelectric Point: 6.8845
>NTDB_id=197577 Q5W_RS18645 WP_009519820.1 3912006..3913049(-) (pilT) [Hydrogenophaga sp. PBC]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDALDHKAVHAMVYDIMNDSQRKQYEEFMECDFSFEIEGLAR
FRVNAFNQNRGAGAVFRTIPSKILTLEQLNAPKIFADLALRPRGLVLVTGPTGSGKSTTLAGMVNHLNETEYGHILTVED
PVEFVHESKKCLVNQREVGPHTLSFSNALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKDMVRAMLSESLVAVISQTLCKLKDGSGRVAAHEIMLGTSAIRNLIREAKVAQMYSAIQTGNSVGMQTLDQN
LTDLVRRNVISPAEARGKAKIPENFPG
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDALDHKAVHAMVYDIMNDSQRKQYEEFMECDFSFEIEGLAR
FRVNAFNQNRGAGAVFRTIPSKILTLEQLNAPKIFADLALRPRGLVLVTGPTGSGKSTTLAGMVNHLNETEYGHILTVED
PVEFVHESKKCLVNQREVGPHTLSFSNALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKDMVRAMLSESLVAVISQTLCKLKDGSGRVAAHEIMLGTSAIRNLIREAKVAQMYSAIQTGNSVGMQTLDQN
LTDLVRRNVISPAEARGKAKIPENFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=197577 Q5W_RS18645 WP_009519820.1 3912006..3913049(-) (pilT) [Hydrogenophaga sp. PBC]
ATGGACATCACCCAACTGCTGGCTTTCAGCGTCAAGAACAAGGCTTCCGATCTTCACTTGTCCGCCGGTTTGCCGCCCAT
GATACGGGTGCATGGCGACGTGCGCCGCATCAACGTCGACGCGCTGGACCACAAGGCTGTTCACGCCATGGTGTACGACA
TCATGAACGACAGCCAGCGCAAGCAGTACGAGGAGTTCATGGAATGCGACTTCTCGTTCGAGATCGAGGGTCTGGCGCGT
TTCCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGCACCATCCCGAGCAAGATCCTCACGCTGGA
GCAACTCAACGCGCCCAAGATCTTCGCCGACCTGGCCCTGCGCCCGCGCGGCCTGGTGCTGGTCACCGGCCCCACGGGCT
CGGGCAAGTCCACCACGCTGGCCGGCATGGTCAACCACCTCAACGAAACCGAGTACGGCCACATCCTCACCGTGGAAGAC
CCGGTGGAATTCGTGCACGAATCCAAGAAGTGCCTGGTCAACCAGCGAGAGGTGGGCCCGCACACGCTGAGCTTCTCCAA
CGCGCTGCGCTCGGCCCTGCGTGAAGACCCGGACGCCATCCTCGTGGGCGAGATGCGCGACCTGGAGACCATCCGCCTGG
CCATGACGGCGGCCGAGACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCCAGCGCAGCCAAGACCATCGACCGGATC
ATCGACGTCTTCCCGGCGGAAGAAAAAGACATGGTGCGCGCCATGCTGTCCGAGTCGCTGGTGGCGGTGATCTCGCAGAC
CCTGTGCAAGCTCAAGGACGGCAGTGGCCGTGTGGCGGCGCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTCA
TCCGCGAGGCCAAGGTGGCGCAGATGTACTCCGCCATCCAGACCGGCAACAGCGTGGGCATGCAGACGCTGGACCAGAAC
CTCACCGACCTGGTGCGCCGCAACGTCATCAGCCCGGCCGAGGCACGCGGCAAGGCCAAGATTCCCGAGAACTTCCCAGG
CTGA
ATGGACATCACCCAACTGCTGGCTTTCAGCGTCAAGAACAAGGCTTCCGATCTTCACTTGTCCGCCGGTTTGCCGCCCAT
GATACGGGTGCATGGCGACGTGCGCCGCATCAACGTCGACGCGCTGGACCACAAGGCTGTTCACGCCATGGTGTACGACA
TCATGAACGACAGCCAGCGCAAGCAGTACGAGGAGTTCATGGAATGCGACTTCTCGTTCGAGATCGAGGGTCTGGCGCGT
TTCCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGCACCATCCCGAGCAAGATCCTCACGCTGGA
GCAACTCAACGCGCCCAAGATCTTCGCCGACCTGGCCCTGCGCCCGCGCGGCCTGGTGCTGGTCACCGGCCCCACGGGCT
CGGGCAAGTCCACCACGCTGGCCGGCATGGTCAACCACCTCAACGAAACCGAGTACGGCCACATCCTCACCGTGGAAGAC
CCGGTGGAATTCGTGCACGAATCCAAGAAGTGCCTGGTCAACCAGCGAGAGGTGGGCCCGCACACGCTGAGCTTCTCCAA
CGCGCTGCGCTCGGCCCTGCGTGAAGACCCGGACGCCATCCTCGTGGGCGAGATGCGCGACCTGGAGACCATCCGCCTGG
CCATGACGGCGGCCGAGACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCCAGCGCAGCCAAGACCATCGACCGGATC
ATCGACGTCTTCCCGGCGGAAGAAAAAGACATGGTGCGCGCCATGCTGTCCGAGTCGCTGGTGGCGGTGATCTCGCAGAC
CCTGTGCAAGCTCAAGGACGGCAGTGGCCGTGTGGCGGCGCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTCA
TCCGCGAGGCCAAGGTGGCGCAGATGTACTCCGCCATCCAGACCGGCAACAGCGTGGGCATGCAGACGCTGGACCAGAAC
CTCACCGACCTGGTGCGCCGCAACGTCATCAGCCCGGCCGAGGCACGCGGCAAGGCCAAGATTCCCGAGAACTTCCCAGG
CTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
77.391 |
99.424 |
0.769 |
| pilT | Acinetobacter nosocomialis M2 |
76.812 |
99.424 |
0.764 |
| pilT | Acinetobacter baumannii D1279779 |
76.812 |
99.424 |
0.764 |
| pilT | Acinetobacter baumannii strain A118 |
76.812 |
99.424 |
0.764 |
| pilT | Pseudomonas stutzeri DSM 10701 |
76.522 |
99.424 |
0.761 |
| pilT | Acinetobacter baylyi ADP1 |
74.783 |
99.424 |
0.744 |
| pilT | Legionella pneumophila strain Lp02 |
72.861 |
97.695 |
0.712 |
| pilT | Legionella pneumophila strain ERS1305867 |
72.861 |
97.695 |
0.712 |
| pilT | Neisseria meningitidis 8013 |
66.667 |
99.424 |
0.663 |
| pilT | Neisseria gonorrhoeae MS11 |
66.377 |
99.424 |
0.66 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.155 |
98.271 |
0.66 |
| pilT | Vibrio cholerae strain A1552 |
67.155 |
98.271 |
0.66 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.014 |
99.424 |
0.507 |
| pilU | Vibrio cholerae strain A1552 |
42.687 |
96.542 |
0.412 |
| pilU | Acinetobacter baylyi ADP1 |
40.751 |
99.712 |
0.406 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.194 |
96.542 |
0.398 |