Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BSF20_RS02870 Genome accession   NZ_CP018152
Coordinates   518406..520223 (-) Length   605 a.a.
NCBI ID   WP_024085027.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 513406..525223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS02840 (BSF20_02785) - 514210..514812 (-) 603 WP_003155520.1 NAD(P)H-dependent oxidoreductase -
  BSF20_RS02845 (BSF20_02790) - 515046..515597 (+) 552 WP_014304649.1 PadR family transcriptional regulator -
  BSF20_RS02850 (BSF20_02795) cyoE 515635..516582 (-) 948 WP_072588255.1 heme o synthase -
  BSF20_RS02860 (BSF20_02800) - 516960..517817 (-) 858 WP_069448618.1 VOC family protein -
  BSF20_RS02865 (BSF20_02805) - 517834..518238 (-) 405 WP_003155526.1 DoxX family protein -
  BSF20_RS02870 (BSF20_02810) rcrQ 518406..520223 (-) 1818 WP_024085027.1 ABC transporter ATP-binding protein Regulator
  BSF20_RS02875 (BSF20_02815) - 520204..521937 (-) 1734 WP_003155528.1 ABC transporter ATP-binding protein -
  BSF20_RS02880 (BSF20_02820) - 522075..523661 (-) 1587 WP_052587310.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  BSF20_RS02885 (BSF20_02825) - 523678..524439 (-) 762 WP_003155531.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67476.14 Da        Isoelectric Point: 9.5659

>NTDB_id=173192 BSF20_RS02870 WP_024085027.1 518406..520223(-) (rcrQ) [Bacillus amyloliquefaciens strain LM2303]
MEKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
RTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHATHQPIKTGEIEFRDVSFGYQEDSLILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=173192 BSF20_RS02870 WP_024085027.1 518406..520223(-) (rcrQ) [Bacillus amyloliquefaciens strain LM2303]
GTGGAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCGTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCAATTGATCATTTTATCGTCGGA
CGGACGACGGACGGATTGGCGGGGGTGCTGTTCATACTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTCACCCATCTGCATGAGCTGC
CGATACCGTTTTTTGATAAACAGCGCCTCGGCGATTTGATGAGCCGGGTTACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGACTCC
TGTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGAGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCGTTACAATCATCAGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGGTGGATTTCGATCGGTTCCATCGTCGTATTCGCAGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTGGCGAACCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAGCGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGACGCACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCTGATCTTAAAACATCTGTCCTTCAGCGTTCCGAAAGGACAGTCAATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCCAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGGTCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATCCGTTACGGCCGTCTGGATGCATCTGATCAAGAGGTGGAGGCAGCCGCAAAAGCCGCCAAT
GCCCACGGATTCATCGAACGGCTCCCGAAAGGCTACGATACCGTCCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTTATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAGAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372

Multiple sequence alignment