Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AYJ52_RS09855 Genome accession   NZ_CP014477
Coordinates   2110266..2111303 (-) Length   345 a.a.
NCBI ID   WP_002121749.1    Uniprot ID   A0A009I411
Organism   Acinetobacter pittii strain AP_882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105266..2116303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ52_RS09825 (AYJ52_09825) - 2106056..2106511 (+) 456 WP_002121698.1 bacteriohemerythrin -
  AYJ52_RS09830 (AYJ52_09830) - 2106665..2107732 (+) 1068 WP_029769005.1 membrane protein -
  AYJ52_RS09835 (AYJ52_09835) - 2107732..2108046 (+) 315 WP_014205982.1 RnfH family protein -
  AYJ52_RS09840 (AYJ52_09840) omlA 2108111..2108509 (-) 399 WP_002121740.1 outer membrane protein assembly factor BamE -
  AYJ52_RS09845 (AYJ52_09845) fur 2108621..2109058 (+) 438 WP_002121758.1 ferric iron uptake transcriptional regulator -
  AYJ52_RS09850 (AYJ52_09850) pilU 2109128..2110246 (-) 1119 WP_017386714.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AYJ52_RS09855 (AYJ52_09855) pilT 2110266..2111303 (-) 1038 WP_002121749.1 type IV pilus twitching motility protein PilT Machinery gene
  AYJ52_RS09860 (AYJ52_09860) yggS 2111430..2112122 (+) 693 WP_017386713.1 YggS family pyridoxal phosphate-dependent enzyme -
  AYJ52_RS09865 (AYJ52_09865) sbcC 2112323..2115919 (-) 3597 WP_017386712.1 AAA family ATPase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38389.97 Da        Isoelectric Point: 6.7269

>NTDB_id=171855 AYJ52_RS09855 WP_002121749.1 2110266..2111303(-) (pilT) [Acinetobacter pittii strain AP_882]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALDHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMMDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANHGMTTLDQSL
KNLVSRGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=171855 AYJ52_RS09855 WP_002121749.1 2110266..2111303(-) (pilT) [Acinetobacter pittii strain AP_882]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACACTTGTCTGCTGGCATGCCGCCAAT
GATTCGCGTTGATGGTGAAGTCCGTCGCATTAACTTACCTGCTCTAGATCATAAAGATGTTCATCGTTTGGTCTACGACA
TCATGAATGATAAACAGCGTCGTGACTACGAAGAAAAACTCGAAACCGACTTTTCTTTTGAAGTACCCAACGTTGCTCGT
TTCCGTGTTAACGCATTTAACCAAAACCGTGGTGCGGGTGCAGTGTTTCGTACGATTCCGTCCAAAGTACTCACCATGGA
AGATTTAGGCTTAGGTCAAATCTTTAAAGATATTTGTGATTATCCACGCGGCATTGTACTGGTGACAGGTCCAACAGGTT
CTGGTAAATCGACGACACTTGCAGCGATGATGGACTACATCAACGAAAACCGTTATGACCACATTCTAACGGTTGAAGAC
CCTATCGAATTTGTACACCAATCTAAGAAATGTCTCATCAACCAACGTGAAGTGCATCGTGATACACACGGCTTTAATGA
GGCACTACGTTCAGCACTGCGTGAAGACCCAGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAGACTATTCGTTTAG
CACTTACTGCTGCCGAAACAGGACATTTGGTATTTGGCACGCTGCACACCACTTCTGCTGCGAAAACCATCGACCGTGTA
ATTGATGTATTCCCAGCCGAAGAAAAAGACATGGTTCGTGCCATGCTCTCTGAATCATTGCAGGCTGTAATTTCACAAAC
CCTGCTTAAAAAGAATGGCGGCGGTCGTGTCGCAGCTCATGAAATCATGATTGGTATTCCTGCTATTCGTAACTTAATTC
GTGAAAATAAAGTCGCGCAAATGTACTCAGCTATTCAGACTGGCGCAAATCATGGCATGACCACCCTCGACCAAAGCTTA
AAAAATTTGGTGTCTCGCGGTGTGATCAGCCCGCAAACGGCTCGTACTGCTGCTAAACAGCCTGAATCATTTCTATAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

99.13

100

0.991
  pilT Acinetobacter baumannii D1279779

98.841

100

0.988
  pilT Acinetobacter baumannii strain A118

98.841

100

0.988
  pilT Acinetobacter baylyi ADP1

88.663

99.71

0.884
  pilT Pseudomonas stutzeri DSM 10701

83.43

99.71

0.832
  pilT Pseudomonas aeruginosa PAK

83.14

99.71

0.829
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.429

97.391

0.696
  pilT Vibrio cholerae strain A1552

71.429

97.391

0.696
  pilT Neisseria meningitidis 8013

68.116

100

0.681
  pilT Neisseria gonorrhoeae MS11

67.826

100

0.678
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.884

100

0.519
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.896

97.101

0.397
  pilU Acinetobacter baylyi ADP1

39.017

100

0.391

Multiple sequence alignment