Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LLUC06_RS06540 Genome accession   NZ_CP015902
Coordinates   1300150..1301220 (-) Length   356 a.a.
NCBI ID   WP_003131037.1    Uniprot ID   Q9CG78
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1295150..1306220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS06525 (LLUC06_1269) dprA 1295448..1296296 (+) 849 WP_058220788.1 DNA-processing protein DprA Machinery gene
  LLUC06_RS06530 (LLUC06_1270) topA 1296558..1298690 (+) 2133 WP_023189256.1 type I DNA topoisomerase -
  LLUC06_RS06535 (LLUC06_1271) trmFO 1298762..1300105 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLUC06_RS06540 (LLUC06_1272) xerS 1300150..1301220 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  LLUC06_RS06545 (LLUC06_1273) - 1301704..1301991 (-) 288 WP_015426413.1 hypothetical protein -
  LLUC06_RS06550 (LLUC06_1274) xerS 1302074..1303129 (-) 1056 WP_081213513.1 tyrosine recombinase XerS Machinery gene
  LLUC06_RS06555 (LLUC06_1275) - 1303995..1304928 (-) 934 Protein_1265 N(5)-(carboxyethyl)ornithine synthase -
  LLUC06_RS06560 (LLUC06_1276) - 1304967..1305917 (-) 951 WP_148669257.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41397.21 Da        Isoelectric Point: 9.6568

>NTDB_id=155774 LLUC06_RS06540 WP_003131037.1 1300150..1301220(-) (xerS) [Lactococcus lactis subsp. lactis strain UC06]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=155774 LLUC06_RS06540 WP_003131037.1 1300150..1301220(-) (xerS) [Lactococcus lactis subsp. lactis strain UC06]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGTAATCAGTTAGGGCACGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAGCAAAAAAATGCTTTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CG78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767

Multiple sequence alignment