Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PARC_RS15075 Genome accession   NZ_CP011025
Coordinates   3322198..3323238 (-) Length   346 a.a.
NCBI ID   WP_007585408.1    Uniprot ID   -
Organism   Pseudoalteromonas arctica A 37-1-2     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3317198..3328238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARC_RS15045 (PARC_a3402) - 3317452..3317952 (+) 501 WP_010553293.1 hypothetical protein -
  PARC_RS15050 (PARC_a3403) rsmE 3318022..3318756 (+) 735 WP_007585397.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PARC_RS15055 (PARC_a3404) gshB 3318811..3319761 (+) 951 WP_007585399.1 glutathione synthase -
  PARC_RS15060 (PARC_a3405) - 3319917..3320474 (+) 558 WP_007585401.1 YqgE/AlgH family protein -
  PARC_RS15065 (PARC_a3406) ruvX 3320513..3320962 (+) 450 WP_008170791.1 Holliday junction resolvase RuvX -
  PARC_RS15070 (PARC_a3407) pilU 3321052..3322188 (-) 1137 WP_010553294.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PARC_RS15075 (PARC_a3408) pilT 3322198..3323238 (-) 1041 WP_007585408.1 type IV pilus twitching motility protein PilT Machinery gene
  PARC_RS15080 (PARC_a3409) - 3323241..3323954 (+) 714 WP_007585410.1 YggS family pyridoxal phosphate-dependent enzyme -
  PARC_RS15085 (PARC_a3410) proC 3323972..3324793 (+) 822 WP_007585412.1 pyrroline-5-carboxylate reductase -
  PARC_RS15090 (PARC_a3411) - 3324821..3325354 (+) 534 WP_007585413.1 YggT family protein -
  PARC_RS15095 (PARC_a3412) - 3325414..3325857 (+) 444 WP_010553295.1 DUF4426 domain-containing protein -
  PARC_RS15100 (PARC_a3413) - 3325862..3326461 (+) 600 WP_007585416.1 XTP/dITP diphosphatase -
  PARC_RS15105 (PARC_a3414) hemW 3326458..3327594 (+) 1137 WP_010553296.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38089.38 Da        Isoelectric Point: 6.2308

>NTDB_id=141554 PARC_RS15075 WP_007585408.1 3322198..3323238(-) (pilT) [Pseudoalteromonas arctica A 37-1-2]
MDITELLAFSVQHKASDLHLSSGVSPMIRVDGDVRRINIPALADKDVNSLVYDIMNDNQRKDYEQNLEVDFSFEVPNLAR
FRVNAFNSNRGPAAVFRTIPSEVLTLDDLGAPDIFKTISDTPRGLVLVTGPTGSGKSTTLAAMVDYINQNKHHHILTIED
PIEFVHDNKLSLINQREVHRDTHSFSNALRSALREDPDVILVGELRDLETIRLAMTAAETGHLVFGTLHTTSAPKTIDRI
IDVFPGEEKSMVRSMLSESLRAVISQTLLKKIGGGRVAAHEIMIAVPAIRNLIREDKIAQMYSSIQTGASVGMQTMDQCL
TNLVNHGIVTNAAAKEKAQDKTQFGG

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=141554 PARC_RS15075 WP_007585408.1 3322198..3323238(-) (pilT) [Pseudoalteromonas arctica A 37-1-2]
ATGGATATTACCGAATTATTAGCGTTTAGTGTGCAACACAAAGCATCCGATTTACATTTATCGTCGGGTGTTTCACCTAT
GATACGCGTAGACGGTGATGTTCGCCGCATTAATATACCAGCCCTTGCAGACAAAGACGTAAACAGTCTGGTTTACGATA
TTATGAACGATAATCAACGCAAGGACTATGAACAAAATCTCGAAGTGGATTTTTCGTTTGAAGTGCCTAATTTAGCACGT
TTTCGTGTGAATGCGTTTAACTCTAATCGCGGGCCTGCTGCGGTATTTCGTACCATACCAAGTGAAGTGTTAACGCTTGA
TGATTTAGGTGCGCCAGATATTTTTAAAACAATCTCCGATACCCCACGTGGACTCGTGTTAGTGACAGGTCCAACGGGCT
CTGGTAAATCAACAACACTTGCCGCTATGGTCGATTATATAAATCAAAATAAACATCACCATATTCTAACAATAGAAGAT
CCAATCGAGTTTGTTCACGATAATAAATTAAGCCTTATTAATCAACGTGAGGTACATCGCGATACTCATAGCTTTTCAAA
CGCGCTACGTAGTGCATTGCGTGAAGATCCAGATGTAATACTTGTGGGTGAGTTACGTGATTTAGAAACAATTCGTCTTG
CAATGACCGCTGCTGAAACAGGCCACTTAGTGTTTGGCACGTTGCATACAACATCTGCACCAAAAACCATTGACCGTATT
ATCGATGTATTCCCAGGTGAAGAAAAATCAATGGTACGTTCAATGTTATCTGAATCTTTGCGTGCTGTTATCTCGCAAAC
ACTGCTTAAAAAGATTGGTGGCGGGCGAGTTGCAGCACACGAAATTATGATTGCAGTACCTGCTATTCGTAACTTAATTC
GTGAAGATAAAATTGCACAAATGTACTCGTCTATTCAAACCGGTGCGTCTGTGGGCATGCAAACAATGGATCAATGTTTA
ACTAATTTAGTTAATCACGGCATTGTTACAAATGCGGCAGCGAAAGAAAAAGCACAAGACAAAACACAATTTGGCGGGTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

76.744

99.422

0.763
  pilT Acinetobacter nosocomialis M2

76.163

99.422

0.757
  pilT Acinetobacter baumannii D1279779

76.163

99.422

0.757
  pilT Acinetobacter baumannii strain A118

76.163

99.422

0.757
  pilT Pseudomonas aeruginosa PAK

75.581

99.422

0.751
  pilT Acinetobacter baylyi ADP1

75.291

99.422

0.749
  pilT Legionella pneumophila strain Lp02

72.965

99.422

0.725
  pilT Legionella pneumophila strain ERS1305867

72.965

99.422

0.725
  pilT Neisseria gonorrhoeae MS11

70.381

98.555

0.694
  pilT Neisseria meningitidis 8013

70.381

98.555

0.694
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.796

97.977

0.694
  pilT Vibrio cholerae strain A1552

70.796

97.977

0.694
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

99.711

0.52
  pilU Vibrio cholerae strain A1552

42.462

93.931

0.399
  pilU Acinetobacter baylyi ADP1

39.118

98.266

0.384
  pilU Pseudomonas stutzeri DSM 10701

40.181

95.665

0.384

Multiple sequence alignment