Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | PARC_RS15070 | Genome accession | NZ_CP011025 |
| Coordinates | 3321052..3322188 (-) | Length | 378 a.a. |
| NCBI ID | WP_010553294.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas arctica A 37-1-2 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3316052..3327188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PARC_RS15040 (PARC_a3401) | - | 3316496..3317389 (+) | 894 | WP_007585393.1 | hypothetical protein | - |
| PARC_RS15045 (PARC_a3402) | - | 3317452..3317952 (+) | 501 | WP_010553293.1 | hypothetical protein | - |
| PARC_RS15050 (PARC_a3403) | rsmE | 3318022..3318756 (+) | 735 | WP_007585397.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| PARC_RS15055 (PARC_a3404) | gshB | 3318811..3319761 (+) | 951 | WP_007585399.1 | glutathione synthase | - |
| PARC_RS15060 (PARC_a3405) | - | 3319917..3320474 (+) | 558 | WP_007585401.1 | YqgE/AlgH family protein | - |
| PARC_RS15065 (PARC_a3406) | ruvX | 3320513..3320962 (+) | 450 | WP_008170791.1 | Holliday junction resolvase RuvX | - |
| PARC_RS15070 (PARC_a3407) | pilU | 3321052..3322188 (-) | 1137 | WP_010553294.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| PARC_RS15075 (PARC_a3408) | pilT | 3322198..3323238 (-) | 1041 | WP_007585408.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PARC_RS15080 (PARC_a3409) | - | 3323241..3323954 (+) | 714 | WP_007585410.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PARC_RS15085 (PARC_a3410) | proC | 3323972..3324793 (+) | 822 | WP_007585412.1 | pyrroline-5-carboxylate reductase | - |
| PARC_RS15090 (PARC_a3411) | - | 3324821..3325354 (+) | 534 | WP_007585413.1 | YggT family protein | - |
| PARC_RS15095 (PARC_a3412) | - | 3325414..3325857 (+) | 444 | WP_010553295.1 | DUF4426 domain-containing protein | - |
| PARC_RS15100 (PARC_a3413) | - | 3325862..3326461 (+) | 600 | WP_007585416.1 | XTP/dITP diphosphatase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 41965.92 Da Isoelectric Point: 5.6201
>NTDB_id=141553 PARC_RS15070 WP_010553294.1 3321052..3322188(-) (pilU) [Pseudoalteromonas arctica A 37-1-2]
MALSLNDFLLIMIEKKGSDLFVSSQLPVSAKINGELTALSDDRLTDEQSLELVESAMSEKQKAEFHTTKECNFAIATDEG
RFRISAFWQRDKAGMVIRRIVTQIPDVSELGLPSILTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRHQRGHILTIE
DPIEFVHEHRKSIITQREVGLDTESFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDR
IMHLVPKEKHDKLKYDLALNLRAIVAQQLVPTADGESRVAAIEILLNSPMVAELIKNGDIGGIKEAMAKSKEMGMQTFDQ
ALFELYRQQRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLDDKNSDQ
MALSLNDFLLIMIEKKGSDLFVSSQLPVSAKINGELTALSDDRLTDEQSLELVESAMSEKQKAEFHTTKECNFAIATDEG
RFRISAFWQRDKAGMVIRRIVTQIPDVSELGLPSILTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRHQRGHILTIE
DPIEFVHEHRKSIITQREVGLDTESFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDR
IMHLVPKEKHDKLKYDLALNLRAIVAQQLVPTADGESRVAAIEILLNSPMVAELIKNGDIGGIKEAMAKSKEMGMQTFDQ
ALFELYRQQRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLDDKNSDQ
Nucleotide
Download Length: 1137 bp
>NTDB_id=141553 PARC_RS15070 WP_010553294.1 3321052..3322188(-) (pilU) [Pseudoalteromonas arctica A 37-1-2]
ATGGCTTTATCTTTAAACGACTTTTTACTCATCATGATTGAGAAAAAAGGCTCTGACTTATTTGTATCGAGTCAGCTACC
TGTAAGTGCAAAAATAAACGGCGAGCTAACAGCCCTCAGTGACGATAGGCTTACAGATGAGCAATCGCTTGAGTTAGTTG
AATCTGCAATGAGCGAAAAGCAAAAAGCAGAGTTTCATACAACGAAAGAATGTAACTTTGCGATTGCCACCGACGAAGGG
CGTTTTCGTATTTCTGCTTTTTGGCAACGCGATAAAGCAGGTATGGTTATTCGCCGCATTGTTACGCAAATACCTGATGT
GAGTGAGCTAGGTCTTCCTTCTATTCTTACCGATGTAATTATGTCTAAGCGTGGCCTTGTTTTGTTCGTCGGTGGTACTG
GCACGGGTAAATCAACCTCGCTAGCCGCACTTATTGGTTACCGTAACCGACATCAACGTGGTCATATACTGACTATTGAA
GATCCGATTGAATTTGTTCATGAGCATCGCAAAAGTATTATTACTCAACGCGAAGTAGGGCTTGATACCGAAAGCTTTGA
GTCAGCACTTAAAAGCTCATTACGCCAAGCTCCCGATGTAATTTTGATTGGTGAAATTCGCTCTCAAGAAACTATGGAAT
ACGCACTAAGCTTTGCCGAAACAGGCCATTTATGTGTTGCAACACTGCATGCTAACAATGCTAACCAAGCGATTGACCGT
ATTATGCATTTAGTTCCAAAAGAAAAACACGATAAGCTTAAGTACGATTTAGCACTTAACTTACGTGCAATTGTGGCCCA
GCAATTAGTACCGACTGCTGATGGTGAAAGCCGTGTTGCAGCTATTGAAATATTGCTTAACTCACCAATGGTTGCTGAAC
TGATTAAAAACGGTGATATTGGTGGTATTAAAGAGGCAATGGCTAAATCGAAAGAAATGGGCATGCAAACCTTTGACCAA
GCATTATTTGAGCTGTATAGACAGCAGCGAATTAATTACGCTGATGCACTGCATCATGCTGATTCGCCAAATGATTTACG
TTTAATGATTAAACTGCGCAATAACGAGCAGCAAGGTGCGGGCTTTTTACAAGGCGTTACTATTGATGGCCTTGACGATA
AAAATAGCGATCAATAA
ATGGCTTTATCTTTAAACGACTTTTTACTCATCATGATTGAGAAAAAAGGCTCTGACTTATTTGTATCGAGTCAGCTACC
TGTAAGTGCAAAAATAAACGGCGAGCTAACAGCCCTCAGTGACGATAGGCTTACAGATGAGCAATCGCTTGAGTTAGTTG
AATCTGCAATGAGCGAAAAGCAAAAAGCAGAGTTTCATACAACGAAAGAATGTAACTTTGCGATTGCCACCGACGAAGGG
CGTTTTCGTATTTCTGCTTTTTGGCAACGCGATAAAGCAGGTATGGTTATTCGCCGCATTGTTACGCAAATACCTGATGT
GAGTGAGCTAGGTCTTCCTTCTATTCTTACCGATGTAATTATGTCTAAGCGTGGCCTTGTTTTGTTCGTCGGTGGTACTG
GCACGGGTAAATCAACCTCGCTAGCCGCACTTATTGGTTACCGTAACCGACATCAACGTGGTCATATACTGACTATTGAA
GATCCGATTGAATTTGTTCATGAGCATCGCAAAAGTATTATTACTCAACGCGAAGTAGGGCTTGATACCGAAAGCTTTGA
GTCAGCACTTAAAAGCTCATTACGCCAAGCTCCCGATGTAATTTTGATTGGTGAAATTCGCTCTCAAGAAACTATGGAAT
ACGCACTAAGCTTTGCCGAAACAGGCCATTTATGTGTTGCAACACTGCATGCTAACAATGCTAACCAAGCGATTGACCGT
ATTATGCATTTAGTTCCAAAAGAAAAACACGATAAGCTTAAGTACGATTTAGCACTTAACTTACGTGCAATTGTGGCCCA
GCAATTAGTACCGACTGCTGATGGTGAAAGCCGTGTTGCAGCTATTGAAATATTGCTTAACTCACCAATGGTTGCTGAAC
TGATTAAAAACGGTGATATTGGTGGTATTAAAGAGGCAATGGCTAAATCGAAAGAAATGGGCATGCAAACCTTTGACCAA
GCATTATTTGAGCTGTATAGACAGCAGCGAATTAATTACGCTGATGCACTGCATCATGCTGATTCGCCAAATGATTTACG
TTTAATGATTAAACTGCGCAATAACGAGCAGCAAGGTGCGGGCTTTTTACAAGGCGTTACTATTGATGGCCTTGACGATA
AAAATAGCGATCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
56.764 |
99.735 |
0.566 |
| pilU | Pseudomonas stutzeri DSM 10701 |
56.533 |
99.206 |
0.561 |
| pilU | Vibrio cholerae strain A1552 |
56.131 |
97.09 |
0.545 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.659 |
95.503 |
0.407 |