Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QR62_RS04060 Genome accession   NZ_CP012869
Coordinates   829096..829764 (+) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli strain K-12 substr. MG1655_TMP32XR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 824096..834764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR62_RS04030 (QR62_04030) yicC 824116..824979 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  QR62_RS04035 (QR62_04035) rph 825106..825821 (+) 716 Protein_746 ribonuclease PH -
  QR62_RS04040 (QR62_04040) pyrE 825887..826528 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  QR62_RS04045 (QR62_04045) slmA 826565..827161 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  QR62_RS04050 (QR62_04050) dut 827268..827726 (-) 459 WP_000976073.1 dUTP diphosphatase -
  QR62_RS04055 (QR62_04055) coaBC 827704..828924 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  QR62_RS04060 (QR62_04060) radC 829096..829764 (+) 669 WP_001350561.1 RadC family protein Machinery gene
  QR62_RS04065 (QR62_04065) rpmB 829981..830217 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  QR62_RS04070 (QR62_04070) rpmG 830238..830405 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  QR62_RS04075 (QR62_04075) mutM 830503..831312 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  QR62_RS04080 (QR62_04080) coaD 831351..831830 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  QR62_RS04085 (QR62_04085) waaA 831838..833115 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  QR62_RS04090 (QR62_04090) rfaQ 833521..834591 (+) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=136950 QR62_RS04060 WP_001350561.1 829096..829764(+) (radC) [Escherichia coli strain K-12 substr. MG1655_TMP32XR1]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=136950 QR62_RS04060 WP_001350561.1 829096..829764(+) (radC) [Escherichia coli strain K-12 substr. MG1655_TMP32XR1]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment