Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | SB85_RS18160 | Genome accession | NZ_CP010409 |
| Coordinates | 4478204..4479463 (-) | Length | 419 a.a. |
| NCBI ID | WP_043095005.1 | Uniprot ID | - |
| Organism | Xanthomonas sacchari strain R1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4473204..4484463
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SB85_RS18140 (SB85_18210) | - | 4474576..4475253 (+) | 678 | WP_010340533.1 | response regulator transcription factor | - |
| SB85_RS18145 (SB85_18215) | - | 4475246..4476580 (+) | 1335 | WP_043095003.1 | HAMP domain-containing sensor histidine kinase | - |
| SB85_RS18150 (SB85_18220) | coaE | 4476691..4477320 (-) | 630 | WP_043095004.1 | dephospho-CoA kinase | - |
| SB85_RS18155 (SB85_18225) | - | 4477334..4478197 (-) | 864 | WP_017910397.1 | A24 family peptidase | - |
| SB85_RS18160 (SB85_18230) | pilC | 4478204..4479463 (-) | 1260 | WP_043095005.1 | type II secretion system F family protein | Machinery gene |
| SB85_RS18165 (SB85_18235) | pilA/pilAI | 4479829..4480248 (+) | 420 | WP_043095006.1 | pilin | Machinery gene |
| SB85_RS18170 (SB85_18240) | pilB | 4480795..4482528 (+) | 1734 | WP_043095007.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| SB85_RS18175 (SB85_18245) | pilR | 4482694..4484082 (-) | 1389 | WP_043095008.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 45849.35 Da Isoelectric Point: 10.1706
>NTDB_id=136949 SB85_RS18160 WP_043095005.1 4478204..4479463(-) (pilC) [Xanthomonas sacchari strain R1]
MSATRSAVKKEPVARTTSQQVPFVWEGTDKRGVKMKGEQVAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVTSILLVWVVPQFEEVFKGFGAELPAFTQMIVAASRFMVAYWWM
LLLLLIGTIVGFIFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYET
AVLRMRDDVAVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG
MSATRSAVKKEPVARTTSQQVPFVWEGTDKRGVKMKGEQVAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVTSILLVWVVPQFEEVFKGFGAELPAFTQMIVAASRFMVAYWWM
LLLLLIGTIVGFIFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYET
AVLRMRDDVAVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=136949 SB85_RS18160 WP_043095005.1 4478204..4479463(-) (pilC) [Xanthomonas sacchari strain R1]
ATGTCCGCAACTCGCAGCGCAGTCAAGAAAGAGCCGGTCGCGCGCACTACCAGCCAACAGGTGCCCTTCGTCTGGGAAGG
CACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAAGTCGCCAAGAATGCCAACCTATTGCGTGCGGAGCTGCGCCGTC
AGGGCATTACTCCTTCGGTGGTCAAGCCCAAGCCCAAGCCGTTGTTTGGCGCCGCTGGCAAGAAGATTAGCCCCAAGGAC
ATCGCCTTCTTCAGCCGACAGATGGCAACGATGATGAAGTCGGGCGTGCCGATTGTTGGTTCGCTGGAGATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACCAGATACGCACCGATATCGAGGGCGGCTCATCCCTGTACGAGG
CGATCAGCAAGCATCCAGTGCAGTTCGACGAGTTGTACCGCAATCTGGTCAAGGCCGGCGAGGGCGCCGGCGTGCTTGAG
ACGGTGCTGGAAACGGTTGCCACCTACAAAGAGAATATCGAAGCACTGAAGGGCAAGATCAAGAAGGCCTTGTTTTACCC
CGCCATGGTGATGGCGGTTGCCCTGATCGTCACTTCGATTCTATTGGTCTGGGTCGTTCCGCAGTTTGAGGAGGTGTTCA
AGGGCTTCGGTGCGGAGCTACCGGCCTTCACCCAGATGATCGTTGCTGCATCTCGCTTCATGGTGGCCTACTGGTGGATG
CTGTTGCTCTTGTTGATCGGCACCATCGTCGGCTTCATCTTCGCCTACAAACGTTCGCCTGCGATGCAGCATGGGATGGA
CCGACTGGTGCTCAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCGGTCGCGCGTTTCTCGCGTACCTTGGCGG
TGACCTTCCGCGCCGGCGTACCGCTGGTGGAGGCGCTGGACATCGTCGCGGGCGCTACCGGCAATAGCGTCTATGAGACT
GCCGTGCTGCGCATGCGCGACGACGTCGCAGTTGGCTACCCGGTCAACATGGCGATGAAGCAGACCAATCTGTTTCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCACTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTCAATAATGCGGTCGATGCCCTCAGCAGCCTGCTGGAACCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA
ATGTCCGCAACTCGCAGCGCAGTCAAGAAAGAGCCGGTCGCGCGCACTACCAGCCAACAGGTGCCCTTCGTCTGGGAAGG
CACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAAGTCGCCAAGAATGCCAACCTATTGCGTGCGGAGCTGCGCCGTC
AGGGCATTACTCCTTCGGTGGTCAAGCCCAAGCCCAAGCCGTTGTTTGGCGCCGCTGGCAAGAAGATTAGCCCCAAGGAC
ATCGCCTTCTTCAGCCGACAGATGGCAACGATGATGAAGTCGGGCGTGCCGATTGTTGGTTCGCTGGAGATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACCAGATACGCACCGATATCGAGGGCGGCTCATCCCTGTACGAGG
CGATCAGCAAGCATCCAGTGCAGTTCGACGAGTTGTACCGCAATCTGGTCAAGGCCGGCGAGGGCGCCGGCGTGCTTGAG
ACGGTGCTGGAAACGGTTGCCACCTACAAAGAGAATATCGAAGCACTGAAGGGCAAGATCAAGAAGGCCTTGTTTTACCC
CGCCATGGTGATGGCGGTTGCCCTGATCGTCACTTCGATTCTATTGGTCTGGGTCGTTCCGCAGTTTGAGGAGGTGTTCA
AGGGCTTCGGTGCGGAGCTACCGGCCTTCACCCAGATGATCGTTGCTGCATCTCGCTTCATGGTGGCCTACTGGTGGATG
CTGTTGCTCTTGTTGATCGGCACCATCGTCGGCTTCATCTTCGCCTACAAACGTTCGCCTGCGATGCAGCATGGGATGGA
CCGACTGGTGCTCAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCGGTCGCGCGTTTCTCGCGTACCTTGGCGG
TGACCTTCCGCGCCGGCGTACCGCTGGTGGAGGCGCTGGACATCGTCGCGGGCGCTACCGGCAATAGCGTCTATGAGACT
GCCGTGCTGCGCATGCGCGACGACGTCGCAGTTGGCTACCCGGTCAACATGGCGATGAAGCAGACCAATCTGTTTCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCACTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTCAATAATGCGGTCGATGCCCTCAGCAGCCTGCTGGAACCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.788 |
94.511 |
0.508 |
| pilC | Acinetobacter baylyi ADP1 |
51.716 |
97.375 |
0.504 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.283 |
94.511 |
0.504 |
| pilC | Acinetobacter baumannii D1279779 |
51.861 |
96.181 |
0.499 |
| pilG | Neisseria gonorrhoeae MS11 |
44 |
95.465 |
0.42 |
| pilG | Neisseria meningitidis 44/76-A |
43.5 |
95.465 |
0.415 |
| pilC | Vibrio cholerae strain A1552 |
42.716 |
96.659 |
0.413 |
| pilC | Vibrio campbellii strain DS40M4 |
40.05 |
94.749 |
0.379 |