Detailed information NTG0136952

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SB85_RS18175
• Genome accession: NZ_CP010409
• Coordinates: 4482694..4484082 (-)
• Length: 462 a.a.
• NCBI ID: WP_043095008.1
• Uniprot ID: A0AAW9GVB5
• Organism: Xanthomonas sacchari strain R1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4477694..4489082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SB85_RS18160 (SB85_18230)	pilC	4478204..4479463 (-)	1260	WP_043095005.1	type II secretion system F family protein	Machinery gene
SB85_RS18165 (SB85_18235)	pilA/pilAI	4479829..4480248 (+)	420	WP_043095006.1	pilin	Machinery gene
SB85_RS18170 (SB85_18240)	pilB	4480795..4482528 (+)	1734	WP_043095007.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SB85_RS18175 (SB85_18245)	pilR	4482694..4484082 (-)	1389	WP_043095008.1	sigma-54 dependent transcriptional regulator	Regulator
SB85_RS18180 (SB85_18250)	-	4484165..4485778 (-)	1614	WP_043095009.1	ATP-binding protein	-
SB85_RS18185 (SB85_18255)	sucC	4486170..4487339 (+)	1170	WP_010342227.1	ADP-forming succinate--CoA ligase subunit beta	-
SB85_RS18190 (SB85_18260)	sucD	4487362..4488237 (+)	876	WP_010342226.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49908.29 Da
• Isoelectric Point: 6.6703

>NTDB_id=136952 SB85_RS18175 WP_043095008.1 4482694..4484082(-) (pilR) [Xanthomonas sacchari strain R1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPQPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARSAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=136952 SB85_RS18175 WP_043095008.1 4482694..4484082(-) (pilR) [Xanthomonas sacchari strain R1]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCAAACACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTTGTCAAGCATGCGCTGGAACTCAACAACGAAAGCCGCGCCGCGCCGCCACAGCCGG
CCCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGCCCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCTCCGCCGGCCCCTTCGTCCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CGCCACCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCAGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCGGCGCTGGA
CGCCCTGAGCAGCTATGCCTTCCCCGGCAATGTGCGCGAACTGGAAAACATCCTCGAGCGCGCCCTGGCAATGGCCGAGG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAAGCCGCCCCGGCC
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGTTGGGCATCACCTTTCGGGCGCTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.826	99.567	0.626
pilR	Acinetobacter baumannii strain A118	47.084	100	0.472