Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QOT06_RS06310 Genome accession   NZ_OX461117
Coordinates   1464545..1465582 (+) Length   345 a.a.
NCBI ID   WP_006082517.1    Uniprot ID   A0AA50Q7P7
Organism   Shewanella baltica strain SF1039 isolate SF1039     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1459545..1470582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOT06_RS06280 rdgB 1460557..1461174 (-) 618 WP_011847370.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  QOT06_RS06285 - 1461314..1461748 (-) 435 WP_006082522.1 DUF4426 domain-containing protein -
  QOT06_RS06290 yggU 1461880..1462179 (-) 300 WP_012587167.1 DUF167 family protein YggU -
  QOT06_RS06295 - 1462179..1462727 (-) 549 WP_006082520.1 YggT family protein -
  QOT06_RS06300 proC 1462777..1463595 (-) 819 WP_006082519.1 pyrroline-5-carboxylate reductase -
  QOT06_RS06305 - 1463811..1464509 (-) 699 WP_259503832.1 YggS family pyridoxal phosphate-dependent enzyme -
  QOT06_RS06310 pilT 1464545..1465582 (+) 1038 WP_006082517.1 type IV pilus twitching motility protein PilT Machinery gene
  QOT06_RS06315 pilU 1465592..1466704 (+) 1113 WP_006085705.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QOT06_RS06320 - 1466892..1467431 (+) 540 WP_037392614.1 glutathione peroxidase -
  QOT06_RS06325 hemH 1467464..1468477 (+) 1014 WP_259559835.1 ferrochelatase -
  QOT06_RS06330 ruvX 1468563..1468988 (-) 426 WP_006082513.1 Holliday junction resolvase RuvX -
  QOT06_RS06335 - 1469018..1469581 (-) 564 WP_006082512.1 YqgE/AlgH family protein -
  QOT06_RS06340 yciH 1469648..1469977 (-) 330 WP_037392612.1 stress response translation initiation inhibitor YciH -
  QOT06_RS06345 - 1470156..1470473 (-) 318 WP_283628054.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38297.94 Da        Isoelectric Point: 6.9095

>NTDB_id=1159821 QOT06_RS06310 WP_006082517.1 1464545..1465582(+) (pilT) [Shewanella baltica strain SF1039 isolate SF1039]
MEITELLAFSVKHKASDLHLSAGISPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAAAVFRTIPSDILSLEQLGAPEIFKKIASFPRGLVLVTGPTGSGKSTTLAAMVDYVNENRHDHILTIED
PIEFVHQNKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAGEKDMVRTMLSESLQAVISQTLIKKVGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLEQCL
QNLVNRGLITREDAMAKSSNKQATF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1159821 QOT06_RS06310 WP_006082517.1 1464545..1465582(+) (pilT) [Shewanella baltica strain SF1039 isolate SF1039]
ATGGAAATCACTGAGTTATTGGCATTTAGTGTAAAACACAAAGCCTCGGATCTACACCTTTCTGCAGGGATATCTCCCAT
GATCCGTGTCGACGGTGAAGTGAGAAAGATTAACCTGCCCGCGCTCGATCACCAAGGCGTACACAGCCTAGTGTACGACA
TAATGAATGATAAGCAGCGCAAGGACTACGAAGAACATTTAGAAATCGATTTCTCGTTCGAAGTCCCTAATCTTGCACGC
TTTCGTGTTAACGCATTCAATCAATCCCGTGGTGCTGCGGCCGTATTTCGTACCATTCCTAGCGACATCTTGTCACTTGA
GCAATTAGGTGCGCCGGAGATTTTTAAAAAAATCGCCAGTTTCCCTCGGGGATTAGTTCTAGTGACTGGGCCAACAGGTT
CGGGTAAGAGTACCACACTTGCCGCTATGGTGGATTACGTTAACGAAAATCGACACGATCACATCTTAACCATTGAAGAT
CCTATCGAATTCGTTCACCAAAATAAGCAATGTTTGATTAACCAGCGTGAAGTTCACCGCCATACCCACAGCTTTAATGC
GGCGCTTAGAAGCGCACTACGTGAAGATCCGGACGTGATTTTAGTCGGTGAGATGCGTGACCTTGAAACCATTCGTTTGG
CGATGACCGCTGCAGAAACAGGCCACTTAGTGTTTGGTACCTTGCATACCACCTCTGCCGCGAAAACCATTGACCGTGTG
GTCGACGTATTCCCCGCCGGTGAAAAAGACATGGTGCGCACTATGTTGTCGGAATCGCTGCAAGCGGTTATTTCGCAAAC
CCTGATTAAAAAGGTAGGCGGAGGCCGTGTCGCCGCCCATGAAATCATGATGGGCACTCCCGCTATTCGTAACCTTATTC
GTGAAGACAAAGTGGCGCAGATGTATTCGGCGATTCAAACCGGTATGGCCCACGGAATGCAGACCTTAGAGCAATGTTTA
CAGAACTTAGTCAATCGCGGTCTTATCACCCGTGAAGATGCAATGGCGAAGAGTTCGAATAAACAAGCGACATTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.409

99.13

0.797
  pilT Acinetobacter baumannii D1279779

80.409

99.13

0.797
  pilT Acinetobacter baumannii strain A118

80.409

99.13

0.797
  pilT Acinetobacter baylyi ADP1

77.843

99.42

0.774
  pilT Pseudomonas aeruginosa PAK

78.698

97.971

0.771
  pilT Pseudomonas stutzeri DSM 10701

77.485

99.13

0.768
  pilT Legionella pneumophila strain Lp02

75.073

98.841

0.742
  pilT Legionella pneumophila strain ERS1305867

75.073

98.841

0.742
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

73.294

97.681

0.716
  pilT Vibrio cholerae strain A1552

73.294

97.681

0.716
  pilT Neisseria meningitidis 8013

69.767

99.71

0.696
  pilT Neisseria gonorrhoeae MS11

69.477

99.71

0.693
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.558

98.261

0.487
  pilU Pseudomonas stutzeri DSM 10701

41.983

99.42

0.417
  pilU Vibrio cholerae strain A1552

41.399

99.42

0.412
  pilU Acinetobacter baylyi ADP1

39.763

97.681

0.388

Multiple sequence alignment