Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QOT06_RS06315 Genome accession   NZ_OX461117
Coordinates   1465592..1466704 (+) Length   370 a.a.
NCBI ID   WP_006085705.1    Uniprot ID   -
Organism   Shewanella baltica strain SF1039 isolate SF1039     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460592..1471704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOT06_RS06285 - 1461314..1461748 (-) 435 WP_006082522.1 DUF4426 domain-containing protein -
  QOT06_RS06290 yggU 1461880..1462179 (-) 300 WP_012587167.1 DUF167 family protein YggU -
  QOT06_RS06295 - 1462179..1462727 (-) 549 WP_006082520.1 YggT family protein -
  QOT06_RS06300 proC 1462777..1463595 (-) 819 WP_006082519.1 pyrroline-5-carboxylate reductase -
  QOT06_RS06305 - 1463811..1464509 (-) 699 WP_259503832.1 YggS family pyridoxal phosphate-dependent enzyme -
  QOT06_RS06310 pilT 1464545..1465582 (+) 1038 WP_006082517.1 type IV pilus twitching motility protein PilT Machinery gene
  QOT06_RS06315 pilU 1465592..1466704 (+) 1113 WP_006085705.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QOT06_RS06320 - 1466892..1467431 (+) 540 WP_037392614.1 glutathione peroxidase -
  QOT06_RS06325 hemH 1467464..1468477 (+) 1014 WP_259559835.1 ferrochelatase -
  QOT06_RS06330 ruvX 1468563..1468988 (-) 426 WP_006082513.1 Holliday junction resolvase RuvX -
  QOT06_RS06335 - 1469018..1469581 (-) 564 WP_006082512.1 YqgE/AlgH family protein -
  QOT06_RS06340 yciH 1469648..1469977 (-) 330 WP_037392612.1 stress response translation initiation inhibitor YciH -
  QOT06_RS06345 - 1470156..1470473 (-) 318 WP_283628054.1 hypothetical protein -
  QOT06_RS06350 - 1470653..1471213 (+) 561 WP_012089749.1 DUF4136 domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40986.13 Da        Isoelectric Point: 6.2352

>NTDB_id=1159822 QOT06_RS06315 WP_006085705.1 1465592..1466704(+) (pilU) [Shewanella baltica strain SF1039 isolate SF1039]
MDVLPFLKVIVERKASDLFITAGFPPSAKIDGELRPLAESAFTPAQSLDFVESLMTEAQKQEFHSTRECNFAFAAKDLGR
FRVSAFWQRESPGCVMRRIETKIPDVDDLKLPPILKDLVMSKRGLIIMVGGTGTGKSTSLAALVGYRNGHARGHILTIED
PVEFVHDHRKSIITQREVGIDTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI
MHLVPESKHQQLLFDLSLNLRGIVAQQLIPKVDGTGRRAAIEVLINTPRVASLIAKNELHLLKETMAKSNEQGMQTFDQA
LLKLYVDGEISYADALHHADSPNDLRLMIKLQNKESTGSGFMEGVTLDMD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1159822 QOT06_RS06315 WP_006085705.1 1465592..1466704(+) (pilU) [Shewanella baltica strain SF1039 isolate SF1039]
ATGGATGTTCTTCCGTTTTTAAAAGTGATCGTTGAGCGCAAAGCCTCCGACTTGTTTATCACAGCTGGCTTTCCGCCAAG
TGCTAAGATTGACGGTGAGTTGCGTCCCTTGGCCGAAAGTGCCTTTACTCCGGCACAATCACTGGATTTTGTTGAATCCT
TAATGACCGAAGCGCAGAAACAAGAGTTTCATTCGACTCGTGAGTGTAACTTTGCTTTTGCGGCAAAGGATTTAGGTCGT
TTTCGGGTGAGCGCCTTTTGGCAGCGTGAATCGCCAGGCTGTGTGATGCGTCGTATCGAAACTAAAATCCCTGACGTCGA
TGATTTAAAACTGCCACCCATTCTGAAAGATCTGGTGATGAGTAAACGTGGTCTCATTATTATGGTGGGCGGAACGGGTA
CAGGTAAGTCGACATCTCTAGCTGCCTTGGTGGGATATCGTAATGGTCATGCTCGAGGCCATATTCTCACGATTGAAGAT
CCAGTCGAATTTGTTCACGACCACAGAAAAAGCATTATCACCCAGCGTGAAGTGGGCATAGATACTGAATCTTTCGATGC
GGCGCTAAAAAGTTCGCTTCGCCAAGCACCCGATGTGATTTTGATTGGTGAAATTCGTACCCAAGAGACGATGGAGTTCG
CTCTGTCGTTTGCGGAAACAGGCCACCTCTGTATGGCAACCTTGCATGCCAACAACGCCAACCAAGCATTAGACCGCATT
ATGCACCTCGTGCCTGAGAGTAAACATCAGCAGTTATTGTTCGATTTGTCATTGAATTTGCGCGGTATTGTGGCGCAGCA
ATTGATCCCAAAAGTCGATGGCACTGGGCGCCGCGCCGCGATTGAAGTATTGATTAACACCCCAAGGGTGGCGAGTTTAA
TTGCGAAGAACGAGCTGCATTTACTCAAAGAAACCATGGCAAAATCCAACGAGCAGGGCATGCAGACGTTCGATCAAGCC
TTGCTCAAACTTTATGTCGATGGCGAGATTAGTTACGCCGATGCGCTGCACCATGCTGATTCACCGAACGATTTACGTTT
GATGATTAAATTACAGAATAAAGAATCCACGGGCTCAGGCTTTATGGAAGGTGTCACCTTAGACATGGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

59.946

100

0.603
  pilU Vibrio cholerae strain A1552

58.919

100

0.589
  pilU Acinetobacter baylyi ADP1

61.08

95.135

0.581
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.556

97.297

0.395
  pilT Vibrio cholerae strain A1552

42.424

89.189

0.378
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

42.424

89.189

0.378
  pilT Acinetobacter baumannii D1279779

39.181

92.432

0.362
  pilT Acinetobacter baumannii strain A118

39.181

92.432

0.362
  pilT Acinetobacter nosocomialis M2

39.181

92.432

0.362
  pilT Legionella pneumophila strain Lp02

40.483

89.459

0.362
  pilT Legionella pneumophila strain ERS1305867

40.483

89.459

0.362

Multiple sequence alignment