Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   BQ6873_RS09690 Genome accession   NZ_LT671418
Coordinates   2058534..2059577 (+) Length   347 a.a.
NCBI ID   WP_076592465.1    Uniprot ID   -
Organism   Herminiimonas arsenitoxidans strain AS8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2053534..2064577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ6873_RS09660 - 2053575..2055011 (+) 1437 WP_076592459.1 DHA2 family efflux MFS transporter permease subunit -
  BQ6873_RS09665 - 2055055..2055696 (+) 642 WP_076592460.1 DJ-1/PfpI family protein -
  BQ6873_RS09670 - 2055712..2056212 (+) 501 WP_076592461.1 GNAT family N-acetyltransferase -
  BQ6873_RS09675 - 2056424..2056837 (+) 414 WP_076592462.1 RcnB family protein -
  BQ6873_RS09680 proC 2056919..2057743 (-) 825 WP_076592463.1 pyrroline-5-carboxylate reductase -
  BQ6873_RS09685 - 2057733..2058437 (-) 705 WP_076592464.1 YggS family pyridoxal phosphate-dependent enzyme -
  BQ6873_RS09690 pilT 2058534..2059577 (+) 1044 WP_076592465.1 type IV pilus twitching motility protein PilT Machinery gene
  BQ6873_RS09695 pilU 2059614..2060750 (+) 1137 WP_076592466.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  BQ6873_RS09700 - 2060747..2061232 (+) 486 WP_076592467.1 glutathione peroxidase -
  BQ6873_RS09705 glcF 2061308..2062540 (-) 1233 WP_076592468.1 glycolate oxidase subunit GlcF -
  BQ6873_RS09710 glcE 2062641..2063696 (-) 1056 WP_076592469.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38034.64 Da        Isoelectric Point: 6.7833

>NTDB_id=1145951 BQ6873_RS09690 WP_076592465.1 2058534..2059577(+) (pilT) [Herminiimonas arsenitoxidans strain AS8]
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKVYEERLEIDFSFAIPGLAR
FRVNAFNQDRGAAAVLRTIPSKILSLEDLNAPKIFTELSLKPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIED
PIEFVHDSKKCLINQREVGPHTHSFENALRSALREDPDVVLVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGDEKEMVRAMLSESLQAVISQTLLKTKDGTGRVAAHEIMLGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDSN
LTELVKRNVISNATARAAAKTPDNFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1145951 BQ6873_RS09690 WP_076592465.1 2058534..2059577(+) (pilT) [Herminiimonas arsenitoxidans strain AS8]
ATGGACATTTCAGAACTACTTGCGTTCTCGGTCAAGAATAAAGCATCCGATCTTCATTTATCCGCCGGCTTGCCTCCAAT
GATTCGTGTGCACGGAGATGTGCGTCGTATCAATTTGCCACCGTTAGAGCACAAAGATGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAAGTGTATGAAGAAAGACTGGAAATCGATTTTTCCTTCGCCATTCCTGGTCTGGCACGC
TTCCGCGTCAATGCCTTCAATCAGGACCGCGGTGCGGCAGCAGTACTGCGTACAATTCCTTCCAAAATTCTGAGTCTGGA
AGATTTGAATGCTCCCAAGATTTTTACTGAGCTGTCATTAAAACCACGCGGTCTGGTTCTCGTCACAGGACCGACCGGTT
CCGGCAAATCGACCACGCTGGCAGCAATGGTCAATCACGTCAATGAAAACGAATACGCCCACATTCTGACGATTGAAGAT
CCGATTGAATTCGTCCACGATTCGAAAAAATGTCTGATCAATCAACGCGAAGTCGGCCCACATACTCATTCGTTTGAAAA
CGCATTGCGCTCGGCACTGCGCGAAGATCCCGATGTCGTTCTGGTTGGCGAGTTGCGCGATCTGGAAACCATACGTCTGG
CATTGTCCGCAGCAGAAACCGGTCACCTTGTATTCGGCACGCTGCATACCTCGTCCGCAGCAAAAACCATAGACCGTATC
ATCGACGTCTTCCCTGGCGATGAAAAAGAAATGGTGCGCGCGATGTTGTCCGAATCATTGCAAGCCGTTATCTCGCAAAC
TTTGCTGAAAACAAAAGACGGCACAGGTCGTGTGGCAGCGCATGAAATCATGCTCGGCACACCTGCGATTCGCAATCTGA
TACGCGAAGCAAAAATTGCGCAAATGTATTCGGCAATCCAGACAGGCTCAAATGTCGGCATGCAGACGCTGGACAGCAAT
CTGACTGAGTTGGTAAAGCGCAATGTGATTTCAAATGCAACAGCGCGCGCTGCTGCCAAGACACCGGATAACTTCCCAGG
CTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

76.812

99.424

0.764
  pilT Acinetobacter baumannii D1279779

76.812

99.424

0.764
  pilT Acinetobacter baumannii strain A118

76.812

99.424

0.764
  pilT Pseudomonas aeruginosa PAK

74.783

99.424

0.744
  pilT Pseudomonas stutzeri DSM 10701

73.623

99.424

0.732
  pilT Legionella pneumophila strain Lp02

74.926

97.695

0.732
  pilT Legionella pneumophila strain ERS1305867

74.926

97.695

0.732
  pilT Acinetobacter baylyi ADP1

73.043

99.424

0.726
  pilT Vibrio cholerae strain A1552

70.606

95.101

0.671
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.606

95.101

0.671
  pilT Neisseria meningitidis 8013

67.536

99.424

0.671
  pilT Neisseria gonorrhoeae MS11

67.246

99.424

0.669
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.145

99.424

0.499
  pilU Acinetobacter baylyi ADP1

41.618

99.712

0.415
  pilU Pseudomonas stutzeri DSM 10701

40.58

99.424

0.403
  pilU Vibrio cholerae strain A1552

39.42

99.424

0.392

Multiple sequence alignment