Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   MORIYA_RS16140 Genome accession   NZ_LS483250
Coordinates   3478901..3479935 (+) Length   344 a.a.
NCBI ID   WP_112716793.1    Uniprot ID   -
Organism   Moritella yayanosii strain DB21MT 5     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3473901..3484935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MORIYA_RS16110 (MORIYA_3387) hemW 3474068..3475273 (-) 1206 WP_408632087.1 radical SAM family heme chaperone HemW -
  MORIYA_RS16115 (MORIYA_3388) - 3475273..3475887 (-) 615 WP_112716783.1 XTP/dITP diphosphatase -
  MORIYA_RS16120 (MORIYA_3389) - 3475986..3476414 (-) 429 WP_112716785.1 DUF4426 domain-containing protein -
  MORIYA_RS16125 (MORIYA_3390) - 3476693..3477238 (-) 546 WP_112716787.1 YggT family protein -
  MORIYA_RS16130 (MORIYA_3391) proC 3477291..3478118 (-) 828 WP_112716789.1 pyrroline-5-carboxylate reductase -
  MORIYA_RS16135 (MORIYA_3392) - 3478175..3478870 (-) 696 WP_112716791.1 YggS family pyridoxal phosphate-dependent enzyme -
  MORIYA_RS16140 (MORIYA_3393) pilT 3478901..3479935 (+) 1035 WP_112716793.1 type IV pilus twitching motility protein PilT Machinery gene
  MORIYA_RS16145 (MORIYA_3394) pilU 3479947..3481062 (+) 1116 WP_112716795.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  MORIYA_RS16150 (MORIYA_3395) yaaA 3481101..3481880 (+) 780 WP_112716797.1 peroxide stress protein YaaA -
  MORIYA_RS16155 (MORIYA_3396) - 3482047..3482694 (-) 648 WP_112716799.1 TIGR04211 family SH3 domain-containing protein -
  MORIYA_RS16160 (MORIYA_3397) - 3482857..3484131 (-) 1275 WP_112716801.1 inorganic phosphate transporter -
  MORIYA_RS16165 (MORIYA_3398) - 3484154..3484834 (-) 681 WP_112716803.1 TIGR00153 family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38527.25 Da        Isoelectric Point: 6.6977

>NTDB_id=1135271 MORIYA_RS16140 WP_112716793.1 3478901..3479935(+) (pilT) [Moritella yayanosii strain DB21MT 5]
MDVTELLTFSVKHNASDLHLSSGVPPMIRVDGDVRKINLPAFDAKQVHALIYDIMDDKQRKDYEENLEVDFSFEINNVAR
FRVNAFNQHRGPAATFRTIPSDIKTLAELSVPDILYDLVELPRGLVLVTGPTGSGKSTTLAAMIDHINEHQHKHILTIED
PIEFVHKNKKSLINQREVYRDTKSFNAALRSALREDPDIILIGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPGQEKAMVRSMLSESLRAVISQTLLKRTGGGRVAAHEIMLGTPAIRNLIREDKVAQMYSVIQTGMMHGMQTLDQSL
RELVNMGIVTSEEARIRAVDQQKF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1135271 MORIYA_RS16140 WP_112716793.1 3478901..3479935(+) (pilT) [Moritella yayanosii strain DB21MT 5]
ATGGATGTTACAGAGTTACTTACATTTAGTGTAAAGCATAACGCATCAGATCTACACCTTTCTTCGGGTGTACCTCCAAT
GATCCGTGTGGATGGTGATGTACGTAAAATAAACTTACCAGCTTTTGACGCTAAACAAGTGCATGCGCTGATTTATGACA
TTATGGATGATAAACAACGTAAAGACTACGAAGAAAATTTGGAAGTCGATTTTTCTTTTGAAATTAATAATGTTGCCCGT
TTTCGTGTTAATGCGTTTAATCAACACCGTGGTCCAGCAGCAACTTTTCGTACTATTCCCAGTGACATAAAAACTCTGGC
CGAGTTAAGCGTGCCAGATATTTTGTATGATCTTGTCGAGCTACCGCGTGGTTTAGTATTGGTGACTGGGCCAACTGGCT
CGGGTAAATCTACCACACTGGCTGCGATGATAGATCATATTAATGAGCACCAGCATAAGCACATATTGACCATCGAAGAT
CCGATTGAATTTGTCCATAAAAATAAAAAAAGCTTAATTAATCAGCGTGAAGTATATCGCGATACTAAAAGTTTTAATGC
CGCATTACGGTCGGCGTTACGTGAAGATCCCGACATCATTTTAATAGGTGAAATGCGCGATTTAGAAACTATTCGTCTGG
CATTAACCGCCGCTGAAACGGGACACTTGGTATTTGGTACCTTGCATACCACCTCTGCAGCGAAAACCATTGATCGTATT
GTTGATGTATTTCCAGGACAAGAAAAAGCCATGGTGCGTTCTATGCTGTCGGAATCATTGCGCGCGGTCATTTCGCAAAC
CCTATTAAAACGTACCGGTGGTGGTCGAGTGGCAGCCCATGAGATCATGCTGGGCACTCCCGCTATCCGTAATTTGATCC
GTGAAGATAAAGTCGCGCAAATGTATTCGGTGATCCAAACGGGTATGATGCACGGTATGCAAACCTTAGACCAATCGTTA
CGAGAATTGGTTAATATGGGTATTGTCACCAGCGAAGAAGCGCGCATTAGAGCCGTTGATCAACAAAAATTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baylyi ADP1

74.709

100

0.747
  pilT Acinetobacter baumannii D1279779

74.128

100

0.741
  pilT Acinetobacter baumannii strain A118

74.128

100

0.741
  pilT Pseudomonas stutzeri DSM 10701

74.128

100

0.741
  pilT Pseudomonas aeruginosa PAK

74.128

100

0.741
  pilT Acinetobacter nosocomialis M2

74.128

100

0.741
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.94

97.384

0.701
  pilT Vibrio cholerae strain A1552

71.94

97.384

0.701
  pilT Legionella pneumophila strain Lp02

69.767

100

0.698
  pilT Legionella pneumophila strain ERS1305867

69.767

100

0.698
  pilT Neisseria meningitidis 8013

67.826

100

0.68
  pilT Neisseria gonorrhoeae MS11

67.536

100

0.677
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.594

100

0.517
  pilU Vibrio cholerae strain A1552

42.154

94.477

0.398
  pilU Acinetobacter baylyi ADP1

40.237

98.256

0.395
  pilU Pseudomonas stutzeri DSM 10701

39.528

98.547

0.39

Multiple sequence alignment