Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   JL017_RS04350 Genome accession   NZ_LR883050
Coordinates   888197..889177 (+) Length   326 a.a.
NCBI ID   WP_001355637.1    Uniprot ID   A0A8T5WCU8
Organism   Escherichia coli isolate L1_E925     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 883197..894177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL017_RS04320 (ETECE925_00886) - 883575..884561 (-) 987 WP_000783998.1 TRAP transporter substrate-binding protein -
  JL017_RS04325 (ETECE925_00887) hemW 884874..886010 (-) 1137 WP_000239952.1 radical SAM family heme chaperone HemW -
  JL017_RS04330 (ETECE925_00888) rdgB 886003..886596 (-) 594 WP_001174736.1 XTP/dITP diphosphatase -
  JL017_RS04335 (ETECE925_00889) yggU 886604..886894 (-) 291 WP_001277222.1 DUF167 family protein YggU -
  JL017_RS04340 (ETECE925_00890) yggT 886891..887457 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  JL017_RS04345 (ETECE925_00891) yggS 887475..888179 (-) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  JL017_RS04350 (ETECE925_00892) pilT 888197..889177 (+) 981 WP_001355637.1 type IV pilus twitching motility protein PilT Machinery gene
  JL017_RS04355 (ETECE925_00893) ruvX 889352..889768 (-) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  JL017_RS04360 (ETECE925_00894) yqgE 889768..890331 (-) 564 WP_001355636.1 YqgE/AlgH family protein -
  JL017_RS04365 (ETECE925_00895) gshB 890440..891390 (-) 951 WP_000593266.1 glutathione synthase -
  JL017_RS04370 (ETECE925_00896) rsmE 891403..892134 (-) 732 WP_001300912.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  JL017_RS04375 (ETECE925_00897) endA 892214..892921 (-) 708 WP_000286500.1 deoxyribonuclease I -
  JL017_RS04380 (ETECE925_00898) yggI 893016..893513 (-) 498 WP_047648347.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36002.22 Da        Isoelectric Point: 5.7980

>NTDB_id=1133131 JL017_RS04350 WP_001355637.1 888197..889177(+) (pilT) [Escherichia coli isolate L1_E925]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRTILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPLILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=1133131 JL017_RS04350 WP_001355637.1 888197..889177(+) (pilT) [Escherichia coli isolate L1_E925]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGCGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGACAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACTGATATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGTGGTAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTTAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTTGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCG
TGCCGCATTGCGGGAAGATCCCGATGTGATTTTGCTCGGAGAGCTACGTGACAGCGAGACAATCCGTCTGGCGCTTACGG
CGGCAGAAACCGGGCATTTGGTGCTGGCAACATTACATACACGTGGTGCCGCGCAGGCAGTTGAGCGACTGGTAGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCGGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACGCACCAGTTGCCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGACGTTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(63-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.847

100

0.5
  pilT Vibrio cholerae strain A1552

49.847

100

0.5
  pilT Neisseria meningitidis 8013

49.085

100

0.494
  pilT Neisseria gonorrhoeae MS11

48.78

100

0.491
  pilT Acinetobacter baylyi ADP1

47.095

100

0.472
  pilT Acinetobacter baumannii strain A118

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

40.063

97.239

0.39
  pilU Pseudomonas stutzeri DSM 10701

37.273

100

0.377
  pilB Legionella pneumophila strain ERS1305867

31.152

100

0.365
  pilU Acinetobacter baylyi ADP1

36.646

98.773

0.362

Multiple sequence alignment