Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   H1D10_RS16890 Genome accession   NZ_LR778142
Coordinates   3472151..3473131 (-) Length   326 a.a.
NCBI ID   WP_001305314.1    Uniprot ID   S1P1E1
Organism   Escherichia coli isolate SC434     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3467151..3478131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D10_RS16860 yggI 3467816..3468313 (+) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -
  H1D10_RS16865 endA 3468408..3469115 (+) 708 WP_001305312.1 deoxyribonuclease I -
  H1D10_RS16870 rsmE 3469195..3469926 (+) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  H1D10_RS16875 gshB 3469939..3470889 (+) 951 WP_000593259.1 glutathione synthase -
  H1D10_RS16880 yqgE 3470998..3471561 (+) 564 WP_001053178.1 YqgE/AlgH family protein -
  H1D10_RS16885 ruvX 3471561..3471977 (+) 417 WP_000017106.1 Holliday junction resolvase RuvX -
  H1D10_RS16890 pilT 3472151..3473131 (-) 981 WP_001305314.1 type IV pilus twitching motility protein PilT Machinery gene
  H1D10_RS16895 yggS 3473149..3473853 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  H1D10_RS16900 yggT 3473871..3474437 (+) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  H1D10_RS16905 yggU 3474434..3474724 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  H1D10_RS16910 rdgB 3474732..3475325 (+) 594 WP_001174738.1 XTP/dITP diphosphatase -
  H1D10_RS16915 hemW 3475318..3476454 (+) 1137 WP_000239974.1 radical SAM family heme chaperone HemW -
  H1D10_RS16920 yggM 3476523..3477530 (-) 1008 WP_000745230.1 DUF1202 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36043.27 Da        Isoelectric Point: 5.9975

>NTDB_id=1129993 H1D10_RS16890 WP_001305314.1 3472151..3473131(-) (pilT) [Escherichia coli isolate SC434]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYTSQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VKEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=1129993 H1D10_RS16890 WP_001305314.1 3472151..3473131(-) (pilT) [Escherichia coli isolate SC434]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGAGAATGGAAGCTGCGCCGTTTGACGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCACAACGGCAAGGTATTTCTCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATACCAGTCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACTTTCGCATCGGGATTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGATAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCGACATTACACACGCGCGGCGCAGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCTGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGTTGTCACAAAAACTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACACCCGCGGTGGGGAATTTGATTCGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGAAAGAAGGGCGCTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S1P1E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.78

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.476

100

0.488
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365
  pilB Legionella pneumophila strain ERS1305867

30.89

100

0.362

Multiple sequence alignment