Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilT   Type   Machinery gene
Locus tag   G3W89_RS02655 Genome accession   NZ_LR594659
Coordinates   543261..544304 (-) Length   347 a.a.
NCBI ID   WP_162572647.1    Uniprot ID   A0A6P2E0C7
Organism   Variovorax sp. PBL-H6     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 538261..549304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3W89_RS02630 (H6CHR_00523) - 538497..538862 (+) 366 WP_162577291.1 YraN family protein -
  G3W89_RS02635 (H6CHR_00524) - 538955..539584 (+) 630 WP_162572643.1 SIS domain-containing protein -
  G3W89_RS02640 (H6CHR_00525) - 539581..540324 (+) 744 WP_162572644.1 BON domain-containing protein -
  G3W89_RS02645 (H6CHR_00526) - 540617..541537 (-) 921 WP_162572645.1 NAD(P)-dependent oxidoreductase -
  G3W89_RS02650 (H6CHR_00527) pilU 541573..542709 (-) 1137 WP_162572646.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  G3W89_RS02655 (H6CHR_00528) pilT 543261..544304 (-) 1044 WP_162572647.1 type IV pilus twitching motility protein PilT Machinery gene
  G3W89_RS02660 (H6CHR_00529) - 544342..545028 (+) 687 WP_162577292.1 YggS family pyridoxal phosphate-dependent enzyme -
  G3W89_RS02665 (H6CHR_00530) - 545120..548083 (+) 2964 WP_162572648.1 L-glutamate gamma-semialdehyde dehydrogenase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 38081.82 Da        Isoelectric Point: 6.8845

>NTDB_id=1128163 G3W89_RS02655 WP_162572647.1 543261..544304(-) (pilT) [Variovorax sp. PBL-H6]
MDITQLLAFSVKNKASDLHLSSGLPPMIRVHGDVRRINVDALDHKAVHAMVYDIMSDTHRKHYEEFLEVDFSFEIDGLAR
FRVNAFNQARGAAAVFRTIPSKILTLEQLNAPKIFGDLALKPRGLVLVTGPTGSGKSTTLAAMINFLNETEYGHILTVED
PIEFVHESKKCLINQREVGPMTLSFANALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGEEKEMIRAMLSESLQAVVSQTLCKTKDGQGRVAAHEIMLGTSAIRNLIREGKVAQMYSSIQTGSGQGMQTLDQC
LTDLVRRNVISAAEARGKAKIPENFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1128163 G3W89_RS02655 WP_162572647.1 543261..544304(-) (pilT) [Variovorax sp. PBL-H6]
GTGGACATCACCCAACTGCTGGCCTTCAGCGTGAAGAACAAGGCCTCGGACTTGCATCTGTCATCCGGCCTGCCACCCAT
GATCCGCGTGCACGGCGACGTGCGGCGCATCAACGTCGACGCGCTCGACCACAAGGCCGTGCACGCCATGGTGTACGACA
TCATGAGCGACACGCACCGCAAGCACTACGAAGAATTCCTCGAGGTCGACTTCTCCTTCGAGATCGACGGCCTCGCGCGC
TTCCGCGTCAATGCCTTTAACCAGGCGCGCGGCGCGGCGGCGGTGTTCCGGACCATTCCGTCCAAGATCCTCACGCTGGA
GCAGCTCAACGCGCCGAAGATTTTCGGCGACCTCGCCCTCAAGCCCCGCGGCCTGGTGCTGGTGACCGGCCCCACCGGCT
CGGGCAAGTCCACCACGTTGGCCGCGATGATCAACTTCCTCAACGAGACCGAGTACGGCCACATCCTGACGGTGGAGGAC
CCGATCGAGTTCGTGCACGAATCGAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCTGTCCTTCGCCAA
TGCGCTGCGTTCGGCGCTTCGCGAGGACCCCGACGCGATCCTGGTTGGCGAAATGCGCGACCTGGAGACCATCCGCCTCG
CCATGACTGCGGCCGAGACGGGCCACCTGGTGTTCGGCACCCTGCACACCTCCTCGGCCGCCAAGACGATCGACCGGATC
ATCGACGTGTTCCCGGGCGAGGAGAAGGAAATGATCCGCGCCATGCTGTCGGAGTCGCTGCAGGCCGTGGTCTCGCAGAC
CCTGTGCAAGACCAAGGACGGCCAGGGCCGGGTGGCGGCGCACGAAATCATGCTGGGCACCTCGGCCATCCGCAACCTGA
TCCGCGAAGGCAAGGTGGCGCAGATGTATTCCTCGATCCAGACCGGCAGCGGCCAGGGCATGCAGACGCTGGACCAGTGC
CTGACGGACCTTGTGCGGCGCAATGTCATTTCCGCCGCAGAAGCCCGCGGCAAGGCCAAGATCCCCGAGAATTTCCCCGG
GTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6P2E0C7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

75.652

99.424

0.752

  pilT Pseudomonas aeruginosa PAK

75.362

99.424

0.749

  pilT Acinetobacter nosocomialis M2

75.072

99.424

0.746

  pilT Acinetobacter baumannii D1279779

75.072

99.424

0.746

  pilT Acinetobacter baumannii strain A118

75.072

99.424

0.746

  pilT Acinetobacter baylyi ADP1

74.203

99.424

0.738

  pilT Legionella pneumophila strain Lp02

73.156

97.695

0.715

  pilT Legionella pneumophila strain ERS1305867

73.156

97.695

0.715

  pilT Neisseria meningitidis 8013

67.826

99.424

0.674

  pilT Neisseria gonorrhoeae MS11

67.536

99.424

0.671

  pilT Vibrio cholerae O1 biovar El Tor strain E7946

67.155

98.271

0.66

  pilT Vibrio cholerae strain A1552

67.155

98.271

0.66

  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.304

99.424

0.51

  pilU Vibrio cholerae strain A1552

42.985

96.542

0.415

  pilU Acinetobacter baylyi ADP1

40.462

99.712

0.403

  pilU Pseudomonas stutzeri DSM 10701

40.597

96.542

0.392


Multiple sequence alignment