Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilU   Type   Machinery gene
Locus tag   G3W89_RS02650 Genome accession   NZ_LR594659
Coordinates   541573..542709 (-) Length   378 a.a.
NCBI ID   WP_162572646.1    Uniprot ID   A0A6P2E383
Organism   Variovorax sp. PBL-H6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 536573..547709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3W89_RS02620 (H6CHR_00521) - 537083..537373 (-) 291 WP_162572172.1 RHS repeat domain-containing protein -
  G3W89_RS02625 (H6CHR_00522) rsmI 537541..538473 (-) 933 WP_162572642.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  G3W89_RS02630 (H6CHR_00523) - 538497..538862 (+) 366 WP_162577291.1 YraN family protein -
  G3W89_RS02635 (H6CHR_00524) - 538955..539584 (+) 630 WP_162572643.1 SIS domain-containing protein -
  G3W89_RS02640 (H6CHR_00525) - 539581..540324 (+) 744 WP_162572644.1 BON domain-containing protein -
  G3W89_RS02645 (H6CHR_00526) - 540617..541537 (-) 921 WP_162572645.1 NAD(P)-dependent oxidoreductase -
  G3W89_RS02650 (H6CHR_00527) pilU 541573..542709 (-) 1137 WP_162572646.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  G3W89_RS02655 (H6CHR_00528) pilT 543261..544304 (-) 1044 WP_162572647.1 type IV pilus twitching motility protein PilT Machinery gene
  G3W89_RS02660 (H6CHR_00529) - 544342..545028 (+) 687 WP_162577292.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence


Protein


Download         Length: 378 a.a.        Molecular weight: 42006.24 Da        Isoelectric Point: 6.5042

>NTDB_id=1128162 G3W89_RS02650 WP_162572646.1 541573..542709(-) (pilU) [Variovorax sp. PBL-H6]
MERDQASQFINELLKLMVSRNGSDLFITADFPPAIKVDGKVTKVSQQALGAQHTLALTRSVMNDRQTAEFERTKECNFAI
SPTAIGRFRVNAFVQQGKVGMVLRTIPAKLPTIDGLGMPQVLKDVTMTKRGLCILVGATGSGKSTTLAAMIDWRNENSFG
HIVTVEDPVEFVHPHKNCVVTQREVGIDTDSWEAALKNTLRQAPDVILMGEIRDRETMEHAVAFAETGHLCMATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLRSLISQRLIPTEDGRGRIAAVEILLNTPLITDLIYKGEVGEIKEVMKKSRNLG
MQTFDQALFDLFETNMISFEDALRNADSANDLRLQIKLNSQRARTTDLSAGTEHFAIV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1128162 G3W89_RS02650 WP_162572646.1 541573..542709(-) (pilU) [Variovorax sp. PBL-H6]
ATGGAACGCGATCAAGCCAGCCAGTTCATCAACGAACTGCTCAAGCTCATGGTGAGCCGCAATGGCAGCGACCTGTTCAT
CACGGCCGACTTCCCGCCCGCGATCAAGGTCGACGGCAAGGTCACCAAGGTGTCGCAGCAGGCGCTGGGCGCGCAGCACA
CGCTGGCGCTCACGCGCTCCGTCATGAACGACCGACAGACGGCCGAGTTCGAGCGCACCAAGGAGTGCAACTTCGCGATC
TCGCCCACCGCCATCGGCCGCTTCCGCGTCAACGCCTTCGTGCAGCAGGGCAAGGTCGGCATGGTGCTGCGGACCATCCC
CGCCAAGCTCCCCACCATCGACGGACTGGGCATGCCGCAGGTGCTGAAGGACGTGACGATGACCAAGCGCGGCCTGTGCA
TCCTGGTCGGCGCCACCGGCTCGGGCAAATCGACCACGCTGGCCGCGATGATCGACTGGCGCAACGAGAACTCCTTCGGC
CACATCGTGACGGTAGAGGACCCGGTCGAATTCGTGCACCCGCACAAGAACTGCGTGGTGACGCAGCGCGAAGTGGGCAT
CGACACCGACAGCTGGGAGGCCGCGCTCAAGAACACGCTGCGCCAGGCGCCCGACGTCATCTTGATGGGCGAGATTCGCG
ACCGCGAGACCATGGAGCATGCGGTAGCCTTCGCCGAGACCGGCCACCTGTGCATGGCCACGCTGCATGCCAACAGCGCC
AACCAGGCGCTCGACCGCATCATCAACTTCTTCCCCGAGGAGCGCCGCGCCCAGCTGCTGATGGACCTGTCGCTGAACCT
GCGCTCGCTGATCTCGCAGCGCCTGATCCCCACCGAGGACGGCCGCGGCCGCATCGCCGCAGTGGAGATCCTGCTGAACA
CGCCGCTCATCACCGACCTGATCTACAAGGGCGAGGTGGGCGAGATCAAGGAGGTCATGAAGAAGAGCCGCAACCTCGGC
ATGCAGACCTTCGACCAGGCACTGTTCGACCTGTTCGAGACCAACATGATTTCCTTCGAGGACGCGCTGCGCAATGCGGA
CTCGGCCAACGACCTGCGGCTGCAGATCAAGCTCAACAGCCAGCGCGCGCGCACGACCGACCTGTCCGCCGGCACCGAGC
ACTTCGCGATCGTCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6P2E383

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

63.143

92.593

0.585

  pilU Acinetobacter baylyi ADP1

57.542

94.709

0.545

  pilU Vibrio cholerae strain A1552

53.444

96.032

0.513

  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.401

89.153

0.405

  pilT Pseudomonas aeruginosa PAK

45.104

89.153

0.402

  pilT Acinetobacter nosocomialis M2

44.144

88.095

0.389

  pilT Acinetobacter baumannii D1279779

44.144

88.095

0.389

  pilT Acinetobacter baumannii strain A118

44.144

88.095

0.389

  pilT Pseudomonas stutzeri DSM 10701

43.323

89.153

0.386

  pilT Legionella pneumophila strain Lp02

43.769

87.037

0.381

  pilT Legionella pneumophila strain ERS1305867

43.769

87.037

0.381

  pilT Acinetobacter baylyi ADP1

42.643

88.095

0.376


Multiple sequence alignment