Detailed information
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | G3W89_RS02650 | Genome accession | NZ_LR594659 |
| Coordinates | 541573..542709 (-) | Length | 378 a.a. |
| NCBI ID | WP_162572646.1 | Uniprot ID | A0A6P2E383 |
| Organism | Variovorax sp. PBL-H6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 536573..547709
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3W89_RS02620 (H6CHR_00521) | - | 537083..537373 (-) | 291 | WP_162572172.1 | RHS repeat domain-containing protein | - |
| G3W89_RS02625 (H6CHR_00522) | rsmI | 537541..538473 (-) | 933 | WP_162572642.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| G3W89_RS02630 (H6CHR_00523) | - | 538497..538862 (+) | 366 | WP_162577291.1 | YraN family protein | - |
| G3W89_RS02635 (H6CHR_00524) | - | 538955..539584 (+) | 630 | WP_162572643.1 | SIS domain-containing protein | - |
| G3W89_RS02640 (H6CHR_00525) | - | 539581..540324 (+) | 744 | WP_162572644.1 | BON domain-containing protein | - |
| G3W89_RS02645 (H6CHR_00526) | - | 540617..541537 (-) | 921 | WP_162572645.1 | NAD(P)-dependent oxidoreductase | - |
| G3W89_RS02650 (H6CHR_00527) | pilU | 541573..542709 (-) | 1137 | WP_162572646.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| G3W89_RS02655 (H6CHR_00528) | pilT | 543261..544304 (-) | 1044 | WP_162572647.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| G3W89_RS02660 (H6CHR_00529) | - | 544342..545028 (+) | 687 | WP_162577292.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42006.24 Da Isoelectric Point: 6.5042
>NTDB_id=1128162 G3W89_RS02650 WP_162572646.1 541573..542709(-) (pilU) [Variovorax sp. PBL-H6]
MERDQASQFINELLKLMVSRNGSDLFITADFPPAIKVDGKVTKVSQQALGAQHTLALTRSVMNDRQTAEFERTKECNFAI
SPTAIGRFRVNAFVQQGKVGMVLRTIPAKLPTIDGLGMPQVLKDVTMTKRGLCILVGATGSGKSTTLAAMIDWRNENSFG
HIVTVEDPVEFVHPHKNCVVTQREVGIDTDSWEAALKNTLRQAPDVILMGEIRDRETMEHAVAFAETGHLCMATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLRSLISQRLIPTEDGRGRIAAVEILLNTPLITDLIYKGEVGEIKEVMKKSRNLG
MQTFDQALFDLFETNMISFEDALRNADSANDLRLQIKLNSQRARTTDLSAGTEHFAIV
MERDQASQFINELLKLMVSRNGSDLFITADFPPAIKVDGKVTKVSQQALGAQHTLALTRSVMNDRQTAEFERTKECNFAI
SPTAIGRFRVNAFVQQGKVGMVLRTIPAKLPTIDGLGMPQVLKDVTMTKRGLCILVGATGSGKSTTLAAMIDWRNENSFG
HIVTVEDPVEFVHPHKNCVVTQREVGIDTDSWEAALKNTLRQAPDVILMGEIRDRETMEHAVAFAETGHLCMATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLRSLISQRLIPTEDGRGRIAAVEILLNTPLITDLIYKGEVGEIKEVMKKSRNLG
MQTFDQALFDLFETNMISFEDALRNADSANDLRLQIKLNSQRARTTDLSAGTEHFAIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=1128162 G3W89_RS02650 WP_162572646.1 541573..542709(-) (pilU) [Variovorax sp. PBL-H6]
ATGGAACGCGATCAAGCCAGCCAGTTCATCAACGAACTGCTCAAGCTCATGGTGAGCCGCAATGGCAGCGACCTGTTCAT
CACGGCCGACTTCCCGCCCGCGATCAAGGTCGACGGCAAGGTCACCAAGGTGTCGCAGCAGGCGCTGGGCGCGCAGCACA
CGCTGGCGCTCACGCGCTCCGTCATGAACGACCGACAGACGGCCGAGTTCGAGCGCACCAAGGAGTGCAACTTCGCGATC
TCGCCCACCGCCATCGGCCGCTTCCGCGTCAACGCCTTCGTGCAGCAGGGCAAGGTCGGCATGGTGCTGCGGACCATCCC
CGCCAAGCTCCCCACCATCGACGGACTGGGCATGCCGCAGGTGCTGAAGGACGTGACGATGACCAAGCGCGGCCTGTGCA
TCCTGGTCGGCGCCACCGGCTCGGGCAAATCGACCACGCTGGCCGCGATGATCGACTGGCGCAACGAGAACTCCTTCGGC
CACATCGTGACGGTAGAGGACCCGGTCGAATTCGTGCACCCGCACAAGAACTGCGTGGTGACGCAGCGCGAAGTGGGCAT
CGACACCGACAGCTGGGAGGCCGCGCTCAAGAACACGCTGCGCCAGGCGCCCGACGTCATCTTGATGGGCGAGATTCGCG
ACCGCGAGACCATGGAGCATGCGGTAGCCTTCGCCGAGACCGGCCACCTGTGCATGGCCACGCTGCATGCCAACAGCGCC
AACCAGGCGCTCGACCGCATCATCAACTTCTTCCCCGAGGAGCGCCGCGCCCAGCTGCTGATGGACCTGTCGCTGAACCT
GCGCTCGCTGATCTCGCAGCGCCTGATCCCCACCGAGGACGGCCGCGGCCGCATCGCCGCAGTGGAGATCCTGCTGAACA
CGCCGCTCATCACCGACCTGATCTACAAGGGCGAGGTGGGCGAGATCAAGGAGGTCATGAAGAAGAGCCGCAACCTCGGC
ATGCAGACCTTCGACCAGGCACTGTTCGACCTGTTCGAGACCAACATGATTTCCTTCGAGGACGCGCTGCGCAATGCGGA
CTCGGCCAACGACCTGCGGCTGCAGATCAAGCTCAACAGCCAGCGCGCGCGCACGACCGACCTGTCCGCCGGCACCGAGC
ACTTCGCGATCGTCTGA
ATGGAACGCGATCAAGCCAGCCAGTTCATCAACGAACTGCTCAAGCTCATGGTGAGCCGCAATGGCAGCGACCTGTTCAT
CACGGCCGACTTCCCGCCCGCGATCAAGGTCGACGGCAAGGTCACCAAGGTGTCGCAGCAGGCGCTGGGCGCGCAGCACA
CGCTGGCGCTCACGCGCTCCGTCATGAACGACCGACAGACGGCCGAGTTCGAGCGCACCAAGGAGTGCAACTTCGCGATC
TCGCCCACCGCCATCGGCCGCTTCCGCGTCAACGCCTTCGTGCAGCAGGGCAAGGTCGGCATGGTGCTGCGGACCATCCC
CGCCAAGCTCCCCACCATCGACGGACTGGGCATGCCGCAGGTGCTGAAGGACGTGACGATGACCAAGCGCGGCCTGTGCA
TCCTGGTCGGCGCCACCGGCTCGGGCAAATCGACCACGCTGGCCGCGATGATCGACTGGCGCAACGAGAACTCCTTCGGC
CACATCGTGACGGTAGAGGACCCGGTCGAATTCGTGCACCCGCACAAGAACTGCGTGGTGACGCAGCGCGAAGTGGGCAT
CGACACCGACAGCTGGGAGGCCGCGCTCAAGAACACGCTGCGCCAGGCGCCCGACGTCATCTTGATGGGCGAGATTCGCG
ACCGCGAGACCATGGAGCATGCGGTAGCCTTCGCCGAGACCGGCCACCTGTGCATGGCCACGCTGCATGCCAACAGCGCC
AACCAGGCGCTCGACCGCATCATCAACTTCTTCCCCGAGGAGCGCCGCGCCCAGCTGCTGATGGACCTGTCGCTGAACCT
GCGCTCGCTGATCTCGCAGCGCCTGATCCCCACCGAGGACGGCCGCGGCCGCATCGCCGCAGTGGAGATCCTGCTGAACA
CGCCGCTCATCACCGACCTGATCTACAAGGGCGAGGTGGGCGAGATCAAGGAGGTCATGAAGAAGAGCCGCAACCTCGGC
ATGCAGACCTTCGACCAGGCACTGTTCGACCTGTTCGAGACCAACATGATTTCCTTCGAGGACGCGCTGCGCAATGCGGA
CTCGGCCAACGACCTGCGGCTGCAGATCAAGCTCAACAGCCAGCGCGCGCGCACGACCGACCTGTCCGCCGGCACCGAGC
ACTTCGCGATCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
63.143 |
92.593 |
0.585 |
| pilU | Acinetobacter baylyi ADP1 |
57.542 |
94.709 |
0.545 |
| pilU | Vibrio cholerae strain A1552 |
53.444 |
96.032 |
0.513 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.401 |
89.153 |
0.405 |
| pilT | Pseudomonas aeruginosa PAK |
45.104 |
89.153 |
0.402 |
| pilT | Acinetobacter nosocomialis M2 |
44.144 |
88.095 |
0.389 |
| pilT | Acinetobacter baumannii D1279779 |
44.144 |
88.095 |
0.389 |
| pilT | Acinetobacter baumannii strain A118 |
44.144 |
88.095 |
0.389 |
| pilT | Pseudomonas stutzeri DSM 10701 |
43.323 |
89.153 |
0.386 |
| pilT | Legionella pneumophila strain Lp02 |
43.769 |
87.037 |
0.381 |
| pilT | Legionella pneumophila strain ERS1305867 |
43.769 |
87.037 |
0.381 |
| pilT | Acinetobacter baylyi ADP1 |
42.643 |
88.095 |
0.376 |